RNA id: TCONS_00001478


Basic Information

Item Value
RNA id TCONS_00001478
length 2049
RNA type mRNA
GC content 0.58
exon number 18
gene id XLOC_000923
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 617620 ~ 656693 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCGGTCGAGGGAGCTCTTCATATTACTGATGGCCGTCGCGTCGACGCTCGCGGTGGAGGTGCCGTCAGACTCCGGGACGGGGCTTCTGGCCGAGCCACAGATCGCCATGTTCTGCGGGAAACTCAACATGCACATCAACATCCAGAGCGGGAAATGGGAGCCGGATCCGTCCGGAAGCAAGAGCTGCATCGGGAATAAAGAGGGAATCCTGCAGTACTGCCAGGAGgTGTATCCGGAGCTGCAGATCACCAATGTGGTGGAGGCCAATCAGCCGGTCAGCATCTGGGACTGGTGTAAGAAGAGCCGCAAGCAGTGCCGCAGTCACATGCACATCGTAGTGCCGTACCGCTGCCTGGTTGGGGAGTTTGTCAGCGATGCTCTGCTGGTTCCTGATAAGTGTAAGTTCCTGCATCAGGAGCGCATGGACATGTGTGAGAGTCACCTGCACTGGCACACCGTCGCCAAAGagTCGTGTGGTGACCGCAGCATGAATCTGCATGATTATGGGATGCTGTTGCCGTGTGGAATTGACCGTTTCCGGGGTGTGGAGTTCGTGTGCTGTCCTGCAGACGCGGGTAAAGAGTCTGAGAGCGCCGCTGTGGAGGAGGACGATTCAGACGTGTGGTGGGGCGGAGCGGAGGCTGATTACACCGAGAACAGcatgaCTCGTGATGCCGCAGCGGAGCCGGCGGTGCTGGAGGATGATGAGGATGCGGACGAGGAAGAGGACGAGGATCAGGATGGAGATGGAGATCGGGACGAGAAGatagaggaagaggaggaggaggaggagcgcaCCCAGAGCACCAGCGCAGCCCTGacctccaccaccaccaccaccactgaGTCTGTAGAGGAGGTGGTGCGAGTGCCGACTCCATCCTCCAGCCCTCCGGATGCAGTGGACCGATATCTGGAGACGCCGGCGGACGAGAACGAACACGCTCACTTTCTACAGGCCAAAGAAAGTTTGGAGACCAAACACCGCGAGCGCATGTCTCAGgTGATGAGGGAATGGGAAGAGGCCGAGAGACAGGCCAAGAGTTTACCACGCAACGACAAGAAGGCCGTGATCCAGcACTTCCAGGAGAAGGTGGAGGCTCTGGAGCAGGAGTCGGCCAGCGAGCGTCAGCAGCTGGTGGAGACACACATGGCACGGGTGGAGGCTCTGCTGAACGACCGCCGCCGCCTCGCCCTCGAGAGCTACCTGTCTGCCCTGCAGGCCGATCCACCACGGCCTCGTCATGTGTTCAGCCTGCTGAAGAAGTATGTACGGGCCGAGCAGAAGGACCgtcaacacacactcaaacacttcGAACACGTGCGCATGGTGGACCCCAAGAAAGCAGCACAGATACGGCCTCAGGTACAAGAGCATTTGAAATGTGATGAACACGTTATTCACactggtaTGATGGTTGTGTTCAGAATGACGGGACTCGCGAGAGgtgtgtgtgtgtgtgtagagctgCTGCAGCGTGAGCAGCAGGAGATGTCCGCTCAGTTGGCGAATCTGCAGAGTGACGCGCGTGTGAGTTATGGGAACGATGCGCTGATGCCCGACAGCACCGCCGGCCTGGAGCTGCTGCCCGCCGAGGACACACAGGGGTTCGGCTTCATACACCCCGAGAGCTTCAACCAGCCCAACACACACAACcaggTTGAGCCTGTCGATGCCCGACCTGTTCCAGACCTAGACCTGGCAACCCGACCAGTGTCTGGACTGAAGCCTGATGACATTCCTGAGCTGCGGATGGAAGCTGAAGAGAGACACAGTGAAGTCTACCACCAGAAGCtgGTTTTCTTTGCGGAGGACGTGAGCTCCAATAAAGGAGCTATTATTGGCCTGATGGTCGGAGGCGTCGTCATAGCAACCATCATCGTCATCACGCTGGTGATGCTGAGGAAGAAGCAGTACACGTCCATCCACCACGGCATCATCGAGGTGGACGCGGCCGTGACTCCAGAGGAGCGTCATCTGTCTAAGATGCAGCAGAACGGCTATGAAAACCCCACCTACAAGTTCTTTGAGCAGATGCACAACTGA

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0007417 central nervous system development biological_process
GO:0060026 convergent extension biological_process
GO:0001944 vasculature development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008201 heparin binding molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
ko00562 Inositol phosphate metabolism
ko00740 Riboflavin metabolism

ZFIN:

id description
ZDB-GENE-000616-13 Predicted to enable heparin binding activity; serine-type endopeptidase inhibitor activity; and transition metal ion binding activity. Acts upstream of or within central nervous system development; convergent extension; and vasculature development. Predicted to be located in Golgi-associated vesicle and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; nervous system; pleuroperitoneal region; segmental plate; and solid lens vesicle. Human ortholog(s) of this gene implicated in APP-related cerebral amyloid angiopathy; Alzheimer's disease; Alzheimer's disease 1; cognitive disorder; and visual epilepsy. Orthologous to human APP (amyloid beta precursor protein).

Ensembl:

ensembl_id ENSDART00000170483

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001467 lncRNA downstream 107657 511771 ~ 513717 (-) True XLOC_000919
TCONS_00001463 lncRNA downstream 136786 479807 ~ 484588 (-) False XLOC_000918
TCONS_00001454 lncRNA downstream 275479 343617 ~ 345895 (-) False XLOC_000914
TCONS_00002896 lncRNA downstream 410561 209129 ~ 210813 (-) True XLOC_000912
TCONS_00002895 lncRNA downstream 420180 199526 ~ 201194 (-) False XLOC_000910
TCONS_00003289 lncRNA upstream 121882 778575 ~ 779614 (-) True XLOC_000927
TCONS_00003290 lncRNA upstream 349244 1005937 ~ 1014866 (-) True XLOC_000929
TCONS_00002897 lncRNA upstream 487269 1143962 ~ 1253194 (-) True XLOC_000931
TCONS_00003292 lncRNA upstream 634482 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00003291 lncRNA upstream 634482 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00001470 mRNA downstream 6736 610082 ~ 614638 (-) False XLOC_000922
TCONS_00001472 mRNA downstream 6782 610689 ~ 614592 (-) False XLOC_000922
TCONS_00001473 mRNA downstream 6782 610693 ~ 614592 (-) True XLOC_000922
TCONS_00001471 mRNA downstream 6791 610327 ~ 614583 (-) False XLOC_000922
TCONS_00001469 mRNA downstream 63114 552275 ~ 558260 (-) True XLOC_000921
TCONS_00001480 mRNA upstream 1712 658405 ~ 669717 (-) True XLOC_000924
TCONS_00001481 mRNA upstream 16470 673163 ~ 681116 (-) True XLOC_000925
TCONS_00001482 mRNA upstream 35045 691738 ~ 714626 (-) True XLOC_000926
TCONS_00001483 mRNA upstream 303516 960209 ~ 999556 (-) False XLOC_000928
TCONS_00001484 mRNA upstream 316774 973467 ~ 999556 (-) True XLOC_000928
TCONS_00001460 other downstream 149449 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001442 other downstream 467528 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 571539 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 576828 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001485 other upstream 394248 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 656912 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001492 other upstream 1214168 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001493 other upstream 1217315 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001497 other upstream 1227667 1884360 ~ 1928111 (-) False XLOC_000939

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_05428160_05443433.mRNA False 2539 mRNA 0.53 17 CI01000299 5427661 ~ 5443433 (-)
bowfin (Amia calva) AMCG00014102 True 5020 mRNA 0.60 15 CM030128.1 1858678 ~ 1869442 (+)