RNA id: TCONS_00001473


Basic Information

Item Value
RNA id TCONS_00001473
length 480
RNA type mRNA
GC content 0.51
exon number 4
gene id XLOC_000922
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 610082 ~ 614638 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATCCGGAAGCGGTTGTTCTTGTCGGTCTGCTGGTTGGTGTCAAACACAAGgttagagcggattttctttCATCGTCTTTATTCTGcatCATGGCTCTTCACAGTGGATTTGCGCGTGTGTCGTCTCTGCTGCGTTCAGCGCTCAGCGTTTCTCTGCGCAGGAACATCGGCCTCTCCGCCGTCCTCTTCAACAAGGCCAAAGACATGGACCCCATTCAGAAACTCTTCCTGGACAAGATCCGAGACTACAACAGCAAGAGCAAgGCGTCTGGTGGTGTAGTGGACGCTGGTCCGGTGTATCAGAAGAATCTGGCGGAGGAAACCACTAAACTGCAGCGTCTGTATGGAGGAGGAGATCTCAGCAAGTTCCCTCAGTTCAGCTTCACAGAGCCTAAGCTGGACGAGACGACGACTAAATGAAGCGCCTCTGTTCATCACTGCTGAAAACGTAcatcaatatttaataaaaaagctCTGGCT

Function

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0006811 ion transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0016020 membrane cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0005739 mitochondrion cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2534 Predicted to enable proton transmembrane transporter activity. Predicted to act upstream of or within ATP synthesis coupled proton transport. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase complex. Orthologous to human ATP5PF (ATP synthase peripheral stalk subunit F6).

Ensembl:

ensembl_id ENSDART00000146351

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001467 lncRNA downstream 96976 511771 ~ 513717 (-) True XLOC_000919
TCONS_00001463 lncRNA downstream 126105 479807 ~ 484588 (-) False XLOC_000918
TCONS_00001454 lncRNA downstream 264798 343617 ~ 345895 (-) False XLOC_000914
TCONS_00002896 lncRNA downstream 399880 209129 ~ 210813 (-) True XLOC_000912
TCONS_00002895 lncRNA downstream 409499 199526 ~ 201194 (-) False XLOC_000910
TCONS_00001475 lncRNA upstream 6398 620990 ~ 622179 (-) False XLOC_000923
TCONS_00003289 lncRNA upstream 163983 778575 ~ 779614 (-) True XLOC_000927
TCONS_00003290 lncRNA upstream 391345 1005937 ~ 1014866 (-) True XLOC_000929
TCONS_00002897 lncRNA upstream 529370 1143962 ~ 1253194 (-) True XLOC_000931
TCONS_00003292 lncRNA upstream 676583 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00001469 mRNA downstream 52433 552275 ~ 558260 (-) True XLOC_000921
TCONS_00001468 mRNA downstream 86260 518853 ~ 524433 (-) True XLOC_000920
TCONS_00001465 mRNA downstream 96907 508885 ~ 513786 (-) False XLOC_000919
TCONS_00001466 mRNA downstream 96931 509072 ~ 513762 (-) False XLOC_000919
TCONS_00001464 mRNA downstream 117475 487189 ~ 493218 (-) True XLOC_000918
TCONS_00001474 mRNA upstream 3028 617620 ~ 625875 (-) False XLOC_000923
TCONS_00001478 mRNA upstream 6782 621374 ~ 656693 (-) False XLOC_000923
TCONS_00001477 mRNA upstream 6782 621374 ~ 656693 (-) False XLOC_000923
TCONS_00001479 mRNA upstream 11958 626550 ~ 633356 (-) True XLOC_000923
TCONS_00001480 mRNA upstream 43813 658405 ~ 669717 (-) True XLOC_000924
TCONS_00001460 other downstream 138768 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001442 other downstream 456847 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 560858 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 566147 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001476 other upstream 6433 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 436349 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 699013 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001492 other upstream 1256269 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001493 other upstream 1259416 1874008 ~ 1885600 (-) False XLOC_000939

Expression Profile

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