RNA id: TCONS_00003290


Basic Information

Item Value
RNA id TCONS_00003290
length 2058
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id XLOC_000929
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1005937 ~ 1014866 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAGTCCCAGCAGCCAATGAGAGCACTGCATGATAGTCATGAGCGCCAATAGAAGAACCAAAACAAACCGGAGCCTGTCAGAAGGAAGCGAGCGGAGTTTCTCCGGTGAAGTGCACAGATGGAGGTGTGCCAGTCTGCGGTGGAGAACCCCCCTGTGCAGGACTCTGAGCAGGCGGAGGTCCAGACGGCGATGCTGTGGAGCATCCAGGAGGCGGTGCAGAGGCAGACGCTGCAGATCGGGGTGTCTGCGTGCGGAGCGACCGCTGTGGTGGACGTCCTGCAGGCGCTTGGCATCTCCGTGAGCCCAGAGACGGTCAACCACTGCGTCAGGACCAGTCTGAGGAGGAATGAGGCGCCTCTGCATGATTATCTGCACTCGCGGAGCACGGCTGGAGCAACGCACCAGCAGCTGATATGCGGAGCGGATCAGGCCAGCGGCGGACGTGTCATTGGTCGATTCTTTGCTCTGCATCCTCGCCGGCGAGTAAAGCTGGTACCATGGTTAGCGCGCTGGATTCTGCGCGGAGCCGTTCCCGTCGCCACTATGAACATGCAGAGAGCTGTTCCTGAAGGAGAGGAGATACCCGACGCCTGGCATCACCAGCTTATCTTCGGAGTTGGACCAAGTGCTGTCTTCATGACCAACCCTCTCGACGTAGTGAGTGAAGAGGAGGTTCATGAGCGTCTGTGCAGTGAGTCTGTGCTGCTCATACGACGGGAGGATATTCTGAAGAGACTCACGCCTGACGTTCAGCTGCCACAGATCTCACAGCAGCATCCGGACTCGCGCTGGAAAACACTTGACGTGGAGGGTCAGGTCCACCAGATGATCAGTGAGGAAGCGCAGGCTGATGATGTCCGTCAGAAAACTCCTCATCTGCTGATTCCAGCGGCGTACAGCTCCGGCGTCACTTTCTTTGCTCTCAGAGACTCTGCTGTGGGTCAGGAGCTGCTCAGCACTCCAGATCTGCCTCCCCTGTGAACATCACACCCTCCATCCACTGACTGCTGACTCTGGATCAGTGCTCCTCTGCTTTTATTCTCTGGATTTTACATAGATGTCGTCGTCATCCTGCTCCGTTTTCATGCTAACAGTGTTCTGTTTATTTTGAGAGAGGTTGAGGATTTGGGTTTATCCAGTAAATGTAGTGATGTGCAAAGACTGAATTGCATCcaaaattaaagtttgtatttacatataccACAGGGCtgatgaatgcttgattctgattggctgatgatcactctaaggtgtttggttattgtcagataaaggcactgctaaagtagttccggcaggtttagagtgcattacagctccatatcactccgctgaatgattagAGCTATTTCACTGCTACAGCAGTTAGAAATCACAACAgtaggaggaggaggagatgtggaggactctagtgctacacacaggagACGTTTGAGGACGACACACACCTCACAAATACACTCTAAGCATACAACATCTGAATAATGGATTTATTGCTGTACTGGAGACCAGAGGAGAAGAGTACTAACCACCTTGTGTGTGCATTGTTTCTAAAAATTCAACAGCCTGTCATCAACttcttaaattatttatatatataaaatatatatgtatatatatatatatatatatatatatatgtatatgtgtgcatgtatatattcacatttatatGTACACagtgcacacacatatattatgtaaatacaattttttttattctggatgcAATTAATCTAGTTTAGTCTTTGCACCACACTAAATAACAGACAAGAAATGTCTAGATCATGTACTGCATGAACTGCCATGATGCATATACCAccacaaatcattttaaaattatgtaatacACCAAGTATTAATATGAATTGTTCAAAAAACTTGAAGTTTTAGAGACGAACTTtagtgtttatgtatttttatttgtaattaatccAAATATCTGTTCAGAAAATGTTCATTAGGCTAACATTTCACCCATTTTAAGTGAGTTTGAAGTCATGCAGTTCTTGAATTCTTTATTGGAATTTTTAAAGCAGACCATTTTGGAAACCATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003289 lncRNA downstream 226323 778575 ~ 779614 (-) True XLOC_000927
TCONS_00001475 lncRNA downstream 383758 620990 ~ 622179 (-) False XLOC_000923
TCONS_00001467 lncRNA downstream 492220 511771 ~ 513717 (-) True XLOC_000919
TCONS_00001463 lncRNA downstream 521349 479807 ~ 484588 (-) False XLOC_000918
TCONS_00001454 lncRNA downstream 660042 343617 ~ 345895 (-) False XLOC_000914
TCONS_00002897 lncRNA upstream 129096 1143962 ~ 1253194 (-) True XLOC_000931
TCONS_00003292 lncRNA upstream 276309 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00003291 lncRNA upstream 276309 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00003293 lncRNA upstream 276309 1291175 ~ 1315753 (-) False XLOC_000932
TCONS_00001488 lncRNA upstream 335245 1350111 ~ 1352997 (-) False XLOC_000933
TCONS_00001483 mRNA downstream 6381 960209 ~ 999556 (-) False XLOC_000928
TCONS_00001484 mRNA downstream 6381 973467 ~ 999556 (-) True XLOC_000928
TCONS_00001482 mRNA downstream 291311 691738 ~ 714626 (-) True XLOC_000926
TCONS_00001481 mRNA downstream 324821 673163 ~ 681116 (-) True XLOC_000925
TCONS_00001480 mRNA downstream 336220 658405 ~ 669717 (-) True XLOC_000924
TCONS_00001489 mRNA upstream 348066 1362932 ~ 1402303 (-) True XLOC_000934
TCONS_00001490 mRNA upstream 604128 1618994 ~ 1627487 (-) False XLOC_000937
TCONS_00001491 mRNA upstream 604287 1619153 ~ 1631399 (-) True XLOC_000937
TCONS_00001494 mRNA upstream 859561 1874427 ~ 1885594 (-) False XLOC_000939
TCONS_00001495 mRNA upstream 860204 1875070 ~ 1885516 (-) False XLOC_000939
TCONS_00001476 other downstream 380857 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001460 other downstream 534012 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001442 other downstream 852091 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 956102 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 961391 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001485 other upstream 36075 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 298739 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001492 other upstream 855995 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001493 other upstream 859142 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001497 other upstream 869494 1884360 ~ 1928111 (-) False XLOC_000939

Expression Profile

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