RNA id: TCONS_00001498


Basic Information

Item Value
RNA id TCONS_00001498
length 964
lncRNA type read_through
GC content 0.45
exon number 6
gene id XLOC_000939
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1870861 ~ 1928225 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agcatagctacAGGTTGTTGCGTTTGGCCCTCTAGTGGTTGAAATCTACAAGTAACTCGCGGAGGAACATTGTTTTGTCGCCATGACATGAGCTGTGGTTCGGCCCCGCTGTTTGCCGCGGATGAATCTGATGCGGTCGTGATCTCCTCAgtgtttaaatgtcactaaaacaACTTTTAAAGTATCCCAATATCAAAAGATGGATATACGAAAAATACATCCAATAAACAGctcTAGGTTCATCGATGAGCCActtcagccaatagcagaacGGCACTACTGTGGAGGTGATGATGTGACGAATGCTGTGACAACTGATGTTACTTTCACTCCGATTGTTCCGCCTCCTAGCACCAGCAGCATTATATGGAAGCACAGAAACAATGCTGGAGTTGTTGTGAAAGTCATTGAATGGGACCAGGATGATGGCAGAACTGAAATTCCCAACCACAACTTCAGAGCCCACGCTAGtctgaacaaacacactggaGAGCTCACTCTGACAAATTTACAGCTCAAACACACTGGCGTTTACACTATTGACATCAACAGTAAAGAGCAGAGAAAGCACTTCCGCCTGACTGTTATGGATCGTGTCAGCAAACCTGATATAAAAACAAACTGTGATCTGGAAAACATTCCTGTCTGTTCTCTGAATTGTGAGGGCGAAGCTTCCTCTAAGAGTACAGTAATCTGGCAGAACTCAGCCGGACAGACGCTAAACAGCAGAGATCCTAATATGAGGACCATCAAAGTGACCAACAGCAGTAACCCTGAGGAGTTTTACACCTGTACACTGAAAAACGCAGTCAGCATGGAGACCAGTGATCCAGTCTATGAGAAGAAGCTGTTTTATGgTACAAACGGACCATTAATTGCCATTCTTTCGACTGTTATAGTTGTCATCTGTCTGATTTGTGGTGTCTGTGCTGCTTTCTGTAGGAGGAgggcatgaatgaatgaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003296 lncRNA downstream 151056 1731517 ~ 1736564 (-) True XLOC_000938
TCONS_00003294 lncRNA downstream 304414 1555296 ~ 1583206 (-) False XLOC_000936
TCONS_00003295 lncRNA downstream 304414 1579918 ~ 1583206 (-) True XLOC_000936
TCONS_00002900 lncRNA downstream 309369 1572981 ~ 1578251 (-) False XLOC_000936
TCONS_00002898 lncRNA downstream 388227 1491941 ~ 1499393 (-) True XLOC_000935
TCONS_00003297 lncRNA upstream 72441 2000666 ~ 2005206 (-) False XLOC_000940
TCONS_00003298 lncRNA upstream 72441 2000666 ~ 2005508 (-) False XLOC_000940
TCONS_00003299 lncRNA upstream 72441 2000666 ~ 2005512 (-) False XLOC_000940
TCONS_00003300 lncRNA upstream 72441 2000666 ~ 2005522 (-) False XLOC_000940
TCONS_00003301 lncRNA upstream 72441 2000666 ~ 2005535 (-) True XLOC_000940
TCONS_00001494 mRNA downstream 2026 1874427 ~ 1885594 (-) False XLOC_000939
TCONS_00001495 mRNA downstream 2104 1875070 ~ 1885516 (-) False XLOC_000939
TCONS_00001491 mRNA downstream 256221 1619153 ~ 1631399 (-) True XLOC_000937
TCONS_00001490 mRNA downstream 260133 1618994 ~ 1627487 (-) False XLOC_000937
TCONS_00001489 mRNA downstream 485317 1362932 ~ 1402303 (-) True XLOC_000934
TCONS_00001502 mRNA upstream 119822 2048047 ~ 2051599 (-) True XLOC_000941
TCONS_00001503 mRNA upstream 132205 2060430 ~ 2061419 (-) True XLOC_000942
TCONS_00001504 mRNA upstream 146288 2074513 ~ 2075529 (-) True XLOC_000943
TCONS_00001505 mRNA upstream 403412 2331637 ~ 2334254 (-) True XLOC_000946
TCONS_00001506 mRNA upstream 518771 2446996 ~ 2449395 (-) False XLOC_000947
TCONS_00001493 other downstream 2020 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001492 other downstream 12502 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001486 other downstream 571867 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001485 other downstream 836563 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001476 other downstream 1262540 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001513 other upstream 1369142 3297367 ~ 3297451 (-) False XLOC_000952
TCONS_00001514 other upstream 1369259 3297484 ~ 3297570 (-) False XLOC_000952
TCONS_00001515 other upstream 1369378 3297603 ~ 3297755 (-) False XLOC_000952
TCONS_00001516 other upstream 1369623 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001517 other upstream 1369781 3298006 ~ 3298088 (-) False XLOC_000952

Expression Profile

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