RNA id: TCONS_00003307


Basic Information

Item Value
RNA id TCONS_00003307
length 1311
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_000954
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 3844836 ~ 3846864 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacacactgtgccttttttttctccctcttctCTCTCCGATTGTCTTACCATCGCCATCACCCTCCAATTATTCCGTCGCGTAAATTAAGACAGGGGAGAGGGCAGCGTATTGTGCAGGAAGCTCTTATTTTAAGTCCTCTCATAAATATTCCACCCTGCCCCAAATGTTACAATCGATCTGACGACAGTACAGCAACAGTGAGCCAATGGAAATCCAAGTTCCACTAGTTGAAACACTAGTTAAGATGGCAACGCATCTCCAAAGACGGATTTACGGGAACCTCTCGCCGAAAcgaaattaaaacaacaaaaatatgaacacaGACAACGCTGCATTGGAGGAAGAAGACATCAGCGAAGAAATCACATGCGCATCCGGCGAGATTCAACGCGATAGCAGCCGTACCACTCACAGGCGTCTCGGGGATGCGTACTTTGCGCGTCCGTTTTTGAGAAAAAAGGATAGACTGGCTAGCTTGTGGATACATTCCGTTTAAAATGGACATTGCAGCGGCTGGATTTTGCCGGGGAATGGCAGTGCGCATCAAGAGAAATTCCTAAACTTGCGTTTTTCCTCGTCTCAGCCTGCTGATCGTCACGTTTCCAGGGAGAGTTTGTGATACCCGGGCTGATCACGAACCACTTCACGGATTATCATACAGTCTGGTAAAAGAGGGACCGGTGTCTTCAAGGTTATGGATTGGCTGTGCTCATGATGTATTCGACTTTACCACATTTAAGCGGATGGAATCGGGGTATAATCGATGACGTCGCGTTTTGCTTTTAATCAACTCGCGTCTTTCTCGCCCGAGGGATGAGCTATGACTGTCACATTTACCGTCAAATGGAGAAATTCAACATAGGCACCTTTGTGAAACGTTGATGTGTCGTGCACTCCGTGGGTTTAACTTCGATACTCCTTTAAAGTTAAAACTGAAGACGTCGGATATGTGGGGTGAGTACGGGAAATGTCATTTGCATAGAGGTATGGCAAGGATCTCTGGTTCGAGGGAAAAATTACTGgcatgatatatatattttttttcaatcacAATGACATGTAGATTTGCTCATCTGTCTCGTTCAACGGCAGATGCTCAAGTTGGAAACCATGGAGATGTCGATTTGTTCAGTACACCAGCAACTGGCTTTACATGTTTTCCTCTTAGAGTTGAGTTGCCGCCGGAAAATACGTTGGAAATGCATTCCCAAATTGCGCATTGAGAGTATTTATGCCAGTGTTACTTTAAATTTCAAAGGAGAAAGAATGTGcgctgtgtttttttcttctcgtTTTTCCTCGTTATCCT

Function

GO:

id name namespace
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0005212 structural constituent of eye lens molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001520 lncRNA downstream 514401 3305549 ~ 3330435 (-) True XLOC_000953
TCONS_00001519 lncRNA downstream 535642 3305549 ~ 3309194 (-) False XLOC_000953
TCONS_00003306 lncRNA downstream 544983 3296607 ~ 3299853 (-) False XLOC_000952
TCONS_00001511 lncRNA downstream 1130561 2704604 ~ 2714275 (-) True XLOC_000950
TCONS_00002901 lncRNA downstream 1342092 2495021 ~ 2502744 (-) False XLOC_000949
TCONS_00002902 lncRNA upstream 183053 4029769 ~ 4074148 (-) True XLOC_000955
TCONS_00003309 lncRNA upstream 237462 4084178 ~ 4250442 (-) False XLOC_000956
TCONS_00003310 lncRNA upstream 336254 4182970 ~ 4250442 (-) False XLOC_000956
TCONS_00003311 lncRNA upstream 361800 4208516 ~ 4250442 (-) False XLOC_000956
TCONS_00001522 lncRNA upstream 388687 4235403 ~ 4250442 (-) True XLOC_000956
TCONS_00001512 mRNA downstream 549791 3100244 ~ 3295045 (-) True XLOC_000951
TCONS_00001510 mRNA downstream 1387290 2454094 ~ 2457546 (-) True XLOC_000948
TCONS_00001508 mRNA downstream 1391651 2448051 ~ 2453185 (-) False XLOC_000947
TCONS_00001509 mRNA downstream 1391662 2450140 ~ 2453174 (-) True XLOC_000947
TCONS_00001507 mRNA downstream 1396244 2447025 ~ 2448592 (-) False XLOC_000947
TCONS_00001524 mRNA upstream 1507773 5354489 ~ 5394752 (-) False XLOC_000963
TCONS_00001525 mRNA upstream 1516853 5363569 ~ 5394791 (-) True XLOC_000963
TCONS_00001526 mRNA upstream 1603061 5449777 ~ 5455502 (-) False XLOC_000964
TCONS_00001527 mRNA upstream 1603154 5449870 ~ 5455498 (-) True XLOC_000964
TCONS_00001528 mRNA upstream 1657412 5504128 ~ 5542565 (-) False XLOC_000965
TCONS_00001518 other downstream 546587 3298112 ~ 3298249 (-) True XLOC_000952
TCONS_00001517 other downstream 546748 3298006 ~ 3298088 (-) False XLOC_000952
TCONS_00001516 other downstream 546900 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001515 other downstream 547081 3297603 ~ 3297755 (-) False XLOC_000952
TCONS_00001514 other downstream 547266 3297484 ~ 3297570 (-) False XLOC_000952
TCONS_00001521 other upstream 363782 4210498 ~ 4210652 (-) True XLOC_000957
TCONS_00001523 other upstream 1231655 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001538 other upstream 2374165 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001542 other upstream 2606688 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001543 other upstream 3295323 7142039 ~ 7142143 (-) True XLOC_000974

Expression Profile

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