RNA id: TCONS_00002902


Basic Information

Item Value
RNA id TCONS_00002902
length 347
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id XLOC_000955
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 4029769 ~ 4074148 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGCACCATCACGTTTAACTGACCGGACCCGGCTTGATCTAGTTTCTGGAGTCTGTTCCGCACCAATTGAAGGAGTCTCCAGGGAAATCAGAGTTTGGAGCGGAGCATCATCAGGCCTGTTCCTCCAGCCGGACGCCCGACTGAAGAGCTGCGAGGACAGGACAGGTGTCTGATACTGAGACTGACACGCGCTACTGAGATTATAGTAACTGCATGGCATAAAGATAATTCCCCATATCTGCTGCGTTTCTACAGCATTGTCCATCAAACTGACACCTTCACACCCATACGGTGAGCGAGGAAGCTTATTTTACACTTAATCAGCTATTTGTTGGCACGTGTAATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003308 lncRNA downstream 182905 3844836 ~ 3846864 (-) True XLOC_000954
TCONS_00003307 lncRNA downstream 183053 3844836 ~ 3846716 (-) False XLOC_000954
TCONS_00001520 lncRNA downstream 699334 3305549 ~ 3330435 (-) True XLOC_000953
TCONS_00001519 lncRNA downstream 720575 3305549 ~ 3309194 (-) False XLOC_000953
TCONS_00003306 lncRNA downstream 729916 3296607 ~ 3299853 (-) False XLOC_000952
TCONS_00003309 lncRNA upstream 10030 4084178 ~ 4250442 (-) False XLOC_000956
TCONS_00003310 lncRNA upstream 108822 4182970 ~ 4250442 (-) False XLOC_000956
TCONS_00003311 lncRNA upstream 134368 4208516 ~ 4250442 (-) False XLOC_000956
TCONS_00001522 lncRNA upstream 161255 4235403 ~ 4250442 (-) True XLOC_000956
TCONS_00002903 lncRNA upstream 709637 4783785 ~ 4785460 (-) False XLOC_000958
TCONS_00001512 mRNA downstream 734724 3100244 ~ 3295045 (-) True XLOC_000951
TCONS_00001510 mRNA downstream 1572223 2454094 ~ 2457546 (-) True XLOC_000948
TCONS_00001508 mRNA downstream 1576584 2448051 ~ 2453185 (-) False XLOC_000947
TCONS_00001509 mRNA downstream 1576595 2450140 ~ 2453174 (-) True XLOC_000947
TCONS_00001507 mRNA downstream 1581177 2447025 ~ 2448592 (-) False XLOC_000947
TCONS_00001524 mRNA upstream 1280341 5354489 ~ 5394752 (-) False XLOC_000963
TCONS_00001525 mRNA upstream 1289421 5363569 ~ 5394791 (-) True XLOC_000963
TCONS_00001526 mRNA upstream 1375629 5449777 ~ 5455502 (-) False XLOC_000964
TCONS_00001527 mRNA upstream 1375722 5449870 ~ 5455498 (-) True XLOC_000964
TCONS_00001528 mRNA upstream 1429980 5504128 ~ 5542565 (-) False XLOC_000965
TCONS_00001518 other downstream 731520 3298112 ~ 3298249 (-) True XLOC_000952
TCONS_00001517 other downstream 731681 3298006 ~ 3298088 (-) False XLOC_000952
TCONS_00001516 other downstream 731833 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001515 other downstream 732014 3297603 ~ 3297755 (-) False XLOC_000952
TCONS_00001514 other downstream 732199 3297484 ~ 3297570 (-) False XLOC_000952
TCONS_00001521 other upstream 136350 4210498 ~ 4210652 (-) True XLOC_000957
TCONS_00001523 other upstream 1004223 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001538 other upstream 2146733 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001542 other upstream 2379256 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001543 other upstream 3067891 7142039 ~ 7142143 (-) True XLOC_000974

Expression Profile

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