RNA id: TU466187


Basic Information

Item Value
RNA id TU466187
length 263
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G405693
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3467518 ~ 3467780 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCGTGAGTATTCACGTAAACACAGTCAGTTATGTTTTAAGTGAACGTAAACAGTTGAGAAAGAAAACACATGTAACAGTATAATGGATCCGTGCGTCAGGTCTTAAAGTGACAGCAGCTTAATATACCTGCTGCCAAATTATGAGATAACATTTAAAATATCTATATGGCAGTTTTTCCCCATGATATCAATGTCAAAATGGCCAGTGAAAATGCTGAGTGACTAGTAACTTTGGAAAACCACCAGCCACAGTGGATAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466184 lncRNA upstream 4936 3462378 ~ 3462582 (+) True G405690
TU466157 lncRNA upstream 56754 3410534 ~ 3410764 (+) True G405663
TU466154 lncRNA upstream 60708 3406585 ~ 3406810 (+) True G405660
TU466114 lncRNA upstream 132313 3334227 ~ 3335205 (+) True G405621
TU466112 lncRNA upstream 146085 3321195 ~ 3321433 (+) True G405619
TU466189 lncRNA downstream 1217 3468997 ~ 3469199 (+) True G405695
TU466191 lncRNA downstream 4595 3472375 ~ 3472615 (+) True G405697
TU466194 lncRNA downstream 9809 3477589 ~ 3477816 (+) True CI01000299_03478949_03486009
TU466067 lncRNA downstream 37515 3505295 ~ 3535698 (+) True G405575
TU466071 lncRNA downstream 84534 3552314 ~ 3557103 (+) True G405579
CI01000299_03453437_03453736.mRNA mRNA upstream 13309 3452300 ~ 3454209 (+) True CI01000299_03453437_03453736
CI01000299_03382616_03423028.mRNA mRNA upstream 43821 3382491 ~ 3423697 (+) True CI01000299_03382616_03423028
CI01000299_03366963_03373293.mRNA mRNA upstream 93836 3366818 ~ 3373682 (+) True CI01000299_03366963_03373293
CI01000299_03268500_03312490.mRNA mRNA upstream 154190 3268193 ~ 3313328 (+) True CI01000299_03268500_03312490
CI01000299_03267154_03267336.mRNA mRNA upstream 200127 3267154 ~ 3267391 (+) True CI01000299_03267154_03267336
CI01000299_03478949_03486009.mRNA mRNA downstream 8308 3476088 ~ 3486009 (+) False CI01000299_03478949_03486009
CI01000299_03495286_03498691.mRNA mRNA downstream 26759 3494539 ~ 3498729 (+) True CI01000299_03495286_03498691
CI01000299_03594891_03678552.mRNA mRNA downstream 127111 3594891 ~ 3679612 (+) True CI01000299_03594891_03678552
CI01000299_03981006_04059237.mRNA mRNA downstream 513226 3981006 ~ 4059237 (+) True CI01000299_03981006_04059237
CI01000299_04105476_04115171.mRNA mRNA downstream 637696 4105476 ~ 4115227 (+) True CI01000299_04105476_04115171
TU466101 other upstream 312344 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 2861168 604870 ~ 606350 (+) True G403972
TU463930 other upstream 3056730 364139 ~ 410788 (+) True G403609
TU463894 other upstream 3395247 35462 ~ 72271 (+) True G403578
TU466041 other downstream 663478 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 827753 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 1022038 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 1234602 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 1456682 4924462 ~ 4927844 (+) True G406096

Expression Profile