RNA id: TU466452


Basic Information

Item Value
RNA id TU466452
length 278
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G405931
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4453592 ~ 4453869 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCTGGTCTGATGAATCATGTGGATGGCCGGGTGCGTGTGCGTCGCTTACCTGGGGAACACATGGCACCAGGATGCACTATGGGAAGAAGGCAAGCCGGCGGAGGCAGTGTGATGCTTTGGGCAATGTTCTGCTGGGAAACCTTGGGTCCTGCCATCCATGTGGATGTTACTTTGACACGTACCACCTACCTAAGCGTTGTTGCTGACCATGTACACCTTTTCATGGAAACTATATTCCCTGGAGGCTGTGGCCTCTTTCAGCAGGATAATGCGCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466393 lncRNA upstream 4597 4418304 ~ 4448995 (+) True G405876
TU466429 lncRNA upstream 38581 4414792 ~ 4415011 (+) True G405912
TU466427 lncRNA upstream 50286 4400579 ~ 4403306 (+) True G405910
TU466426 lncRNA upstream 58149 4393464 ~ 4395443 (+) True G405909
TU466425 lncRNA upstream 62079 4391131 ~ 4391513 (+) True G405908
TU466453 lncRNA downstream 1577 4455446 ~ 4455685 (+) True G405932
TU466460 lncRNA downstream 22119 4475988 ~ 4550799 (+) True G405938
TU466395 lncRNA downstream 45968 4509933 ~ 4510740 (+) True G405878
TU466377 lncRNA downstream 196067 4649936 ~ 4665044 (+) False G405865
TU466398 lncRNA downstream 204472 4658341 ~ 4663395 (+) True G405881
CI01000299_04269257_04269673.mRNA mRNA upstream 183827 4268467 ~ 4269765 (+) True CI01000299_04269257_04269673
CI01000299_04259743_04263032.mRNA mRNA upstream 190099 4258921 ~ 4263493 (+) True CI01000299_04259743_04263032
CI01000299_04131136_04133439.mRNA mRNA upstream 319790 4131060 ~ 4133802 (+) False CI01000299_04131136_04133439
CI01000299_04122601_04126314.mRNA mRNA upstream 327211 4122601 ~ 4126381 (+) True CI01000299_04122601_04126314
CI01000299_04105476_04115171.mRNA mRNA upstream 338365 4105476 ~ 4115227 (+) True CI01000299_04105476_04115171
CI01000299_04472181_04474247.mRNA mRNA downstream 17087 4470956 ~ 4474271 (+) True CI01000299_04472181_04474247
CI01000299_04480751_04492829.mRNA mRNA downstream 26684 4480553 ~ 4493116 (+) False CI01000299_04480751_04492829
CI01000299_04496757_04504238.mRNA mRNA downstream 42517 4496386 ~ 4504483 (+) False CI01000299_04496757_04504238
CI01000299_04513358_04524537.mRNA mRNA downstream 59489 4513358 ~ 4526677 (+) True CI01000299_04513358_04524537
CI01000299_04532498_04539703.mRNA mRNA downstream 78229 4532098 ~ 4539919 (+) True CI01000299_04532498_04539703
TU466350 other upstream 133451 4295533 ~ 4320141 (+) True G405842
TU466041 other upstream 319651 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1298418 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3847242 604870 ~ 606350 (+) True G403972
TU463930 other upstream 4042804 364139 ~ 410788 (+) True G403609
TU466383 other downstream 35949 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 248513 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 470593 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 917312 5371181 ~ 5373579 (+) True G406244
TU466732 other downstream 1783969 6237838 ~ 6300508 (+) True G406161

Expression Profile