RNA id: TU468137



Basic Information


Item Value
RNA id TU468137
length 2881
lncRNA type read_through
GC content 0.39
exon number 2
gene id G407434
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4523411 ~ 4547806 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AACCATTTTAAAACATCCACAAATAAAGATCAGAAATCAGAACACATCAACTAAATTCACAGTTTATTTGAAAACTCCAAAAATATATTTATTATAAAAACTCAGAAAAAGAAAAGCACAGTTGCTATAATGTTCACAAGTGCACACATAAGCGTAATTTCCTGTATGAACCAATTCAAGTAGAAACCAAATAATATAGCCTAGTTCTAAGCTACATAACAACATGTGCTGTATGATTAAGATAAAGACTGGACAAAACCAATCCTGTACTGCATGGTGCATTCCTACACTATAAGAATGAATGAATATTTAGTTTTGGAGGAAACTGTAATACATTCAGTTCTACTTCACGTTCTCCTGAACATAACCATTTCTATGTGGTGTCAAACAACTCTGAAAAATTACCAACTATTGAACTGATTTTGTAAAACAGTAAGAATCCTGAAAACAGTGCTATTATCCTTATGCCAAATGTTGGGCCAATTTACTTTTTTGTGTCCAAATTTCTCCTTGGGACTATGTCACGTTTCTTGATTTCTTCACATTCTTGGTCACAGAATTGTGCTTGTCAACTTTGCGGGCTTAAAGGGGGGTGTAATGCTATTTCATGCATTCTGACTTATTTACACTGTTAAAGAGTTGCATTCTCATGCTAAACACGGCCAAAGTTTCAAAACACGAGTTGGATGTATGACGGAGTATTTCTGTGCCAAATACACTAGGTTTCAGTACAATTCAGGGGCTGCACCCTTTGAAGGCTGCATACATCATCGAGGCAGTCTCATTTGAGAAAAATAAGCATTAGATTGCAATGTAAGAAAGAAACCACAGTATTTTACACTTCACAATGAATATCAGAAAATTTTGTTATGGTTATTTTTCTTAAATATGACATCCTTGATGGAGTATTCAGCCTTCAAATGTGACCTCCGGAGGATGCAGCCTCCGAAATGAGACGCAGCTCCTGTCACCGAAGGAGTGTGTTTTTGGTTGTGAGGGAAAGATTAACTTTTTCAGCTTCCCAAAGAACCCAGCGTTAAGTGAACAGTGGATGAAGTTTGTTTTTCCGGGGCAGCAACGGAGTTGTGCACGTATGTTTGTTTGTTCCCGGGATTTCGGTGATGAATACTTTGTAAACAAGTCCCAGTTCGGCGCTGGATTTGCAGATTGCGGGCGGTGAATAAAGCTGCATCAGATGTCTGTGTTTTGTTGGCAATCGGCGCGCAAGTGCATAAAATGTAAACAACACGAACGTTTTTGTTCCCTTTTTATTTATAATGATGTCGCAGCTAGCAGACGATCTCTACGCAGAAGCTGCGCACGCTCGTGATTCTTTAGCTCCGCCCACGGCACTGACGGCAGACACGCCTCCAGGAGCTTGGCTTTTTTCAGAAAGACTCGGTTTAGCGTATCTATCTTTTATAAATATGACAAAACTAAAGACTTTTCGGAGATATGAAGGATGCATTGTTACTCTAGATGTCCTCAAGATTAACATGAGATTGGCAGAAACTGTGTGTGTGATACCCCCCCTTTAAAAAATATCCATAACCCACACTGAGCTTGTGAGGATCTTATTGAATTCACTGCGGAGATCGGGATAACTGTGATAGCCTACTGGCAGCTTTAAAATGCATCCACATGTGTGTGTTTGTGGTCTGCGAAGAAAATCACTAATGAATTCAATTGTAACAGGCTTCTCTGTGAAATCTGAACCAGCACAGAACCGGAGGAAAAGCTGAAGGGTGTTCAGATCAATTTCAGATACCATGCAACTGTTGTCTGGGGTGCTGTCATGTCATCTGGAAGAGTAACAGCTCTTTCACTGTTTTTGCAGTTGTTTGAATTGCACAGTGCAAACCATCTAATGGTAGCATCCTAACATCCACCATGTGTCCCATTTGTGTCCCATTTGTGCTAGCAGAGGGACCAGATTGTCCTTGTTAGGGACACGTTTGCGCTCAAGAACATCAAACAGTTCATCCGAGTCAACTTCTTTCAAAGCGCTCATAATGACAGTTCTTTCTTGTTCAGACATGTACAGCAGCAGGGAATCCTATAATCTACTGGTTGTAGCACCATAAAGTACTTTTTCCAGGAATGGTTTTTCCAGTTTGGTAAGTATCTAGCTTGGTTCTACCCTACAACACTCTAGCAACTGCTTGCCATTCCTCACACTGATAATCATGATAAAGGGCTGATAAAGTCTGATAAAGGGCACTTTCACATCCAACCCCAGAATGCAGTGATCATAAAAATCCAAATTCAGTATGGCTGTCTCGAAATACACCAATTCCTTCCTACTCTTCAAGATGTCCATTTTGGTGAACACATCTTAATGTAAACCTCCATATAAACTTCTGGATTCTTAAAAGTACAGATTAGGTCAGCAGGTTGTGGTTGATGACTTGTTTGAGGTAGAACATCAGTGATTTCTGTTGTAGAAGCAGGCAGTGTTTGGACACCCCTGCTTTATATACTTCTCTCCCGCAACAGCCAAACGTAACAGATAAAAAAAACAACAACATAATGCACATAATGGTTTTCCACAATGAAATGTTTGGTCACAGGAAGCAACAAAGCAAAGAAAAGATAATCTGCAAGTCGATAAGATGAAAAGTCTTCTTCTTCAAGGACAGCTAAAAACTAAGAGTGTCAAAAACACATCAGATTCAGAGAATGCAGAGTAAAGAATTATAAACATCACTGTGCTTGTCAAAATTTTTCCAGTGTCTTTATCATAATGTGATGATATTATTCACTTTGAGAGATCATGCAGTAGAATTATACTTGACCAAGAGAACAATCCACTATAAATTTAACTTAAAGCATTAGTTCACTTTCAAATGAAAATTACCCCAAGCTTTACTCACCCTCAAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU468132 lncRNA downstream 9064 4509122 ~ 4514347 (-) True G407429
TU468108 lncRNA downstream 41747 4480869 ~ 4481664 (-) True G407416
TU468099 lncRNA downstream 53196 4470012 ~ 4470215 (-) True G407409
TU468098 lncRNA downstream 56391 4466818 ~ 4467020 (-) True G407408
TU468097 lncRNA downstream 56877 4464745 ~ 4466534 (-) False CI01000299_04456420_04468754
TU468120 lncRNA upstream 23325 4571131 ~ 4586048 (-) True G407420
TU468172 lncRNA upstream 88804 4636610 ~ 4637425 (-) True G407467
TU468183 lncRNA upstream 129304 4677110 ~ 4677446 (-) True G407476
TU468184 lncRNA upstream 130212 4678018 ~ 4678228 (-) True G407477
TU468182 lncRNA upstream 156318 4704124 ~ 4704801 (-) True G407475
CI01000299_04456420_04468754.mRNA mRNA downstream 53961 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04398464_04403711.mRNA mRNA downstream 119700 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
CI01000299_04370401_04385955.mRNA mRNA downstream 135391 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04242809_04251680.mRNA mRNA downstream 271546 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04227918_04239792.mRNA mRNA downstream 283619 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04587880_04594059.mRNA mRNA upstream 39988 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04603421_04609353.mRNA mRNA upstream 55585 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04645836_04651938.mRNA mRNA upstream 97833 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
CI01000299_04658984_04668843.mRNA mRNA upstream 111089 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
CI01000299_04708767_04714088.mRNA mRNA upstream 160697 4708503 ~ 4714088 (-) True CI01000299_04708767_04714088
TU467961 other downstream 359087 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2505361 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2642423 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2863411 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3447520 1070607 ~ 1075891 (-) True G404372
TU468235 other upstream 378162 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 893531 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1270763 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1280030 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1984195 6532144 ~ 6534655 (-) True G407899

Expression Profile