RNA id: TCONS_00003332


Basic Information

Item Value
RNA id TCONS_00003332
length 906
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_000998
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8504977 ~ 8510066 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttatgaataaaaatgtaaatacacgtAGGTCTCATGATAATGAACAGCTAAATGAACAAATTCACaacgaaaacaaacaaaaactacatTTAATTACCTTGAAAACTACCCTTTCATCCATTTCTGAAAAGGTGCATTCATCCCGTGTTCTCCTGAGTAACATCTCTCTTCATTCTAACATACAAATTCAAGTTACAAGTGAAAATAAGCATTTAACACTTGATTACATTCACATTTCAAGTCTCAAGAAACAAATTGTGTATTCCAAAAGCAAGGCAAACAATGATTCATATAAGTATAAATAAGCATTCAGTACAAAAATAATGATTTTCATTCACTGCTTGTCTTTACGTAATCACAAAAAATACACATGATTAGTGCAAACATTGCATTAAGAGGTTTGGTGTAGACATGATTAGGTGATGGAAATAAAGCATCGTAACTGTGCGTGTGGTTTTGTTACAGCATGGTGATTTCACTGGGTGGCAGAGTGAGTCTCTTCTCTCGGACAGAAAGCATATTCTCGATGTGCATGGCGATAACTCGACACAGCTCCAGACCCTGCCAAACAACATATGCAGTCATAAATCTCTCATTCATATGTAAAGGAATTCTGCAAGTCATATGAGGGCTGTAACTGCGTGACTCTGTGGTTGGTCAAGTCTCCTATAAGGACGTCTACATAAGGGTAACTGGATCCAGCGCTGGGCCGCTGTGTGTGAGCTGACTGAACCTGCTTCAGCTGCACCTTCACCTGCACCTCCTGACAATACAAATTCAAATGCAAGTCTGATACCTTTGGAAGTCTTTGCCACTGAAAAGGGGCtgtgcaatattattagccccccgttcatttttttcccaatttctgtttaatggagagaagatttatttaacacatttcta

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0035239 tube morphogenesis biological_process
GO:0035295 tube development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0042246 tissue regeneration biological_process
GO:0031099 regeneration biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0051960 regulation of nervous system development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003331 lncRNA downstream 299749 8202390 ~ 8205228 (-) True XLOC_000996
TCONS_00002909 lncRNA downstream 584275 7915480 ~ 7920702 (-) False XLOC_000984
TCONS_00003330 lncRNA downstream 584277 7915480 ~ 7920700 (-) False XLOC_000984
TCONS_00001583 lncRNA upstream 35463 8543152 ~ 8543611 (-) False XLOC_000999
TCONS_00001584 lncRNA upstream 35998 8543687 ~ 8545359 (-) False XLOC_000999
TCONS_00001586 lncRNA upstream 42328 8550017 ~ 8553298 (-) False XLOC_000999
TCONS_00003333 lncRNA upstream 71466 8579155 ~ 8587357 (-) False XLOC_001001
TCONS_00003334 lncRNA upstream 71466 8579155 ~ 8587359 (-) True XLOC_001001
TCONS_00001579 mRNA downstream 76216 8415983 ~ 8428761 (-) False XLOC_000997
TCONS_00001580 mRNA downstream 76241 8422092 ~ 8428736 (-) True XLOC_000997
TCONS_00001578 mRNA downstream 312559 8165340 ~ 8192418 (-) True XLOC_000995
TCONS_00001577 mRNA downstream 363842 8134944 ~ 8141135 (-) True XLOC_000994
TCONS_00001576 mRNA downstream 364214 8127675 ~ 8140763 (-) False XLOC_000994
TCONS_00001582 mRNA upstream 31982 8539671 ~ 8553295 (-) False XLOC_000999
TCONS_00001585 mRNA upstream 42160 8549849 ~ 8553165 (-) False XLOC_000999
TCONS_00001588 mRNA upstream 47634 8555323 ~ 8566567 (-) True XLOC_001000
TCONS_00001591 mRNA upstream 130473 8638162 ~ 8646941 (-) True XLOC_001003
TCONS_00001592 mRNA upstream 141410 8649099 ~ 8652732 (-) False XLOC_001004
TCONS_00001570 other downstream 529208 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001564 other downstream 584771 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001563 other downstream 585410 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001562 other downstream 586095 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001556 other downstream 703331 7801531 ~ 7801646 (-) True XLOC_000982
TCONS_00001587 other upstream 45061 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001595 other upstream 142420 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001610 other upstream 610411 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001617 other upstream 690170 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001629 other upstream 952321 9460010 ~ 9486080 (-) False XLOC_001025

Expression Profile

//