RNA id: TCONS_00001585


Basic Information

Item Value
RNA id TCONS_00001585
length 785
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_000999
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8539671 ~ 8553298 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAAAAGTAGAACAAATGAACATAAAAGCTTTTTCACACGACACATGCTGACTTAAGCTGACCTCGAGTTCGCTTCTTCTCGTTCTTGTTTACAGGATGGAGCACAATTCAATTATAGTTTTAAGCGACGATGAGGATGAAGGCAATTTCTCAATGACCCTCAACGATTCCTCTGTGCTTATCGTTGAAAATGAGACGAAAGGACCAGATGTGCCCAGGCATATCGAGGAGGTGGATGAGGACTTGGCCATCACATACTCCCAAACCGCAACAGTTCTTCCACATGCTAGATACGACTGTGTTCTGCCTTTCTGTCGAGAAGAGCAGAACGTCTCTGGACCTCTACAAGATAATGCTAAGCACTGTGATCAGTGTTTCTGCTATATCTGTGACAAACTAGCCTCCATGtgtgactttTGGACCATTCCTGGCTTTTGCCACTGCAATGCTCATAAGCACAGCGTCTACTGGAAAGCCCTCCGTGAcaagtgcatgatgggatttcTGCATGAGCTGAACTTTACCTTTGATCCATCAGAAATGGATTCAGATCTGCGGCGTGCAGAGACTTTACTGCAGAAATTTGCTGGCAGTTTAGCAATGaaatatgcaaagtttttgttgGGGAATGAGAATCCCAATCAAAAGGACTGCCGCTGCTACTGTCATCACAACAAAAATGCCTTTACACAGAACCAGACCTTAGGATGCAAAGGATGCAGTGGACACCACTTTAAAAACCTGGAGTATGATTACAGTGGTGTCAGTCatcatcttaaaatgtt

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-1 No description available

Ensembl:

ensembl_id ENSDART00000135197

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001584 lncRNA downstream 4490 8543687 ~ 8545359 (-) False XLOC_000999
TCONS_00001583 lncRNA downstream 6238 8543152 ~ 8543611 (-) False XLOC_000999
TCONS_00001581 lncRNA downstream 39783 8506422 ~ 8510066 (-) True XLOC_000998
TCONS_00003332 lncRNA downstream 42160 8504977 ~ 8507689 (-) False XLOC_000998
TCONS_00003331 lncRNA downstream 344621 8202390 ~ 8205228 (-) True XLOC_000996
TCONS_00003333 lncRNA upstream 25990 8579155 ~ 8587357 (-) False XLOC_001001
TCONS_00003334 lncRNA upstream 25990 8579155 ~ 8587359 (-) True XLOC_001001
TCONS_00002917 lncRNA upstream 59410 8612575 ~ 8624942 (-) False XLOC_001002
TCONS_00001589 lncRNA upstream 62370 8615535 ~ 8618644 (-) False XLOC_001002
TCONS_00001590 lncRNA upstream 62688 8615853 ~ 8625266 (-) False XLOC_001002
TCONS_00001579 mRNA downstream 121088 8415983 ~ 8428761 (-) False XLOC_000997
TCONS_00001580 mRNA downstream 121113 8422092 ~ 8428736 (-) True XLOC_000997
TCONS_00001578 mRNA downstream 357431 8165340 ~ 8192418 (-) True XLOC_000995
TCONS_00001577 mRNA downstream 408714 8134944 ~ 8141135 (-) True XLOC_000994
TCONS_00001576 mRNA downstream 409086 8127675 ~ 8140763 (-) False XLOC_000994
TCONS_00001588 mRNA upstream 2158 8555323 ~ 8566567 (-) True XLOC_001000
TCONS_00001591 mRNA upstream 84997 8638162 ~ 8646941 (-) True XLOC_001003
TCONS_00001592 mRNA upstream 95934 8649099 ~ 8652732 (-) False XLOC_001004
TCONS_00001593 mRNA upstream 96739 8649904 ~ 8651718 (-) False XLOC_001004
TCONS_00001594 mRNA upstream 96931 8650096 ~ 8652655 (-) False XLOC_001004
TCONS_00001570 other downstream 574080 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001564 other downstream 629643 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001563 other downstream 630282 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001562 other downstream 630967 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001556 other downstream 748203 7801531 ~ 7801646 (-) True XLOC_000982
TCONS_00001595 other upstream 96944 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001610 other upstream 564935 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001617 other upstream 644694 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001629 other upstream 906845 9460010 ~ 9486080 (-) False XLOC_001025
TCONS_00001646 other upstream 1187637 9740802 ~ 9816875 (-) True XLOC_001029

Expression Profile

//