RNA id: TCONS_00001579


Basic Information

Item Value
RNA id TCONS_00001579
length 3497
RNA type mRNA
GC content 0.35
exon number 4
gene id XLOC_000997
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8415983 ~ 8428761 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGCGCTCTTCCGCAGAATCAGATCCTTGCACACAGCCGCAGCACCGGGAGGATGGATGGAGCGGGCTCGTTTGGAGCGGGCCGAGCCGGTTCGGCCTTTGATCTGGTTGCGTTCGTCAAACAACCACAGACAATCCTAAGAGCGTTGGCATGGATTTTCTCCATGGTGGTCTTTGCGTCTATAATAAATGAGGGCTATGTGAATATGGGTAGCGAGCGGCTGCATTGTGTGTTTAACAAGAACGCAGATGCCTGTAACTACGCCATAACTATAGGAATTATGGCGTTCTTAGCAAGCGTCTTGTTTCTGGCCCTGGACGTCTACTTTCCTCAGATCAGCAGCGTCAAAGATAGAAAGAGAGCAGTGCTGCTGGAGATTGCTTTTTCAGgaTTCTGGACGTTCCTTTGGTTTGTAGGATTCTGCTTTTTGGCCAATCAGTGGAGTCGTACGTCTGATAAGGAGCTTCCTCTGGAACAGGCTTCAGACGCTGCACGAGCTGCTATTGCTTTCTCTTTCTTCTCCATCCTGACCTGGGCGGGGCTCACGGTGTGTGCAGTTCAGCGGTTCCTGCTGGGCACCGACATGACCCTGTTCACCAGCGAGCAAGTGGTCAACCAGCCACCCAAGCAGACGTACCCATCCAATGATGTCATCGGTCAGACCACCATCCCCGTCAATGCCTACCAGAGTCCACCGCTCATCGAAACTGTGGAGACCCGGCCACCTGGATACAAGGTCCCACCTGCGTTTTAATccacagccaatcagaagcagCGCTGAAGGACAGAGTATAGAGTGCCGTCAATGTTAGCTAAATGTATTGTATTGCATTTTAGTAGTGAGGAGGCGAGGGGAAGATGCTCAGCTCTGTAGTACAATACTCACTATTATACACGATCCAACCATTATGTAATCTCACCTTTACTAATGTTACGGGACAGTGATTGATTGCCATCGCCTGCTCGAAATATTTACATCATCCAAATTTAGTCAGAAAAGCATTTACACGTCTTATTTATGCAAGGTAATTAAATAAAGGCACACTTACTATGGACGCTGTTGGTATGGACGCATTTTTCACTGAAAACTGAGAGAAAATGTGACGAGTAACAATAATACTGAAAATACTGAAATCTTTTTTAGTGTTTTCATTGAGTATTCTGGCTTAGAAACTTATAAATTATAGTTAAACTATAAATGGTATTACATTCTGAAGCAGTAAGAACATCTCAACTTCTCAAACATTTTTACTGGCAAACATCTTCATGACTAAACAAGGAAACTGCGagttaagttaaattaaacataattttttttttgtagaaagaTTGACATCATTTTACTGTGTCACTAAAAAAAGACCAAAGTTTTATCTAAAAACGACaagtaacattaaaataatggtgatattttaaagtgaaaaaactgaaatcTTTTTAGTTCTGTCACTGAATGTTCTGGTAACTTACAAATTAtatcaattataataaaattcaatTTTGAAGCAGAAAGACAGTCTTTTCTTCTCACACATTGTCACTACGAAACATTTGCCCGATTAAACAAGGAAACTGCaaggtaaattaaattaaacctgATTTCTTTCAAACAGAAAGATGGATTTTTACtgtgttcactgtaaaaaaaagacaaaaattttaCTTAATAATGTCAAGTGACATTGAAATAATGGTGatattttaaaggggaaaaaaaaaactgaaatcttGTCTTCTCATACAAATGGTTACATTCCTgttacatatttttttctaggAAACATTTTCAAGATTGAAattaaacctgattttttttaaagtagaagATTGACATTATTATTCTGTTTTCACTGAAGATTTCACTTTAAAATATCACCATTATTTTTATGTTACTTGTAGTTTTTAAGTGAAACAATGAAATATTTTAGTGTTTTCACTGCGTTATCTGGCATAGAAACTTACAAATTATATTCAATGTTGAAGcagaaaaactgtttttttttcttgttgcacATTttcactagcaaaaaaaaaactcacaaagtgACAACAAATGGACTTAAAACATAGATATACAAAACACTCTcttctaaataaacaaattaataaataaatgaatgaaagaatgaatgattgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaataaataaataaatgatcaatctCTTCAAGTGTCCAGCCTGATTTAGTGTCAGATAGTTAAGTGGTCCAGTAAGCTGACTGGATGTCACTAGCCAATCTGGAGGCTGTATAGAAACTTATAAATGATATGAgtgataattaaattataaatgacaTTACATTTTGAAGCAGAATGACAGCTTTCTcttctaaaaacatttttactagGAAACGTTTACACAATTCAGAAAATCGCAAACAACATCATTAATTgaacatgatttttttaaagtagaaaGATTAACAGCGTTCTACTGTTCACTGAAAAAACACAAAGGTTTCACTTTAAAAGATCGCCATCATTTCAATGTTAGTTGTAGTTTTCATGTGAAACTTTAAAAGTAAACTGAATAATCCGGCATATAAATTACatgaattataattaaaatacaaaaaatgttttactcgTCACATTTTCACTAGGAAACatgaaaataaacatgattttttaaaGTAGAAATATTGATTGAAAAAACAAGTTTCACCTAAAAACTAAAAGTGTTATTGAATTAGACATGAAATGTATAGAAAGACTGAAACTGTATTTTATTCTTAAACATATTCCAACactctttgttttatttacaacttaaaatatttttatagccTACTAATGATGACCAATTATAAAGTAATCGCTAAACTATACAAAGTGGTTTACAGAAATACGAGTAGCAGACCACCTTTATGGACAAAAAACCAAAGGCTTTTAGACCACTGATCACTATTTCTTGTTAGTATACaacatttcaaatatatttgaCAACATATTCTATTTGTTTGCAAAAGATTCCCAgtgcaaaatgtattatttatacttttacaATTAGAAATGATTTCTGTCTTGATGGACAGCTGTACATCAgtgttttactgtagtaaaatcaGTGCAGTTTGCGTCACTTGTGTCAAAATCTGCTTTTGTTCATTGAGAATTAGCACAGTTTGTTTAAAAGTATTATGTGCTGTCACTATAGAGAAAATgagagtgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatggagCAGTCAGAGATATTCCGGATGAGATCACTGAGATTACTGAAACAGATTGTTTACTTTAACAAGCATATTTGTGCATACcgaatgtgtgtgtggaatgtgtgtgtgcttgctctAATTCTGTCTAATTGCATGATCTGGTCAAATGCCACAGATTTTCATTGAAGCAGAGAGGAAGTGTTCTATTTTGTTACAGTGTCTGACATACAGTACCACGAGGTCCTGAATAAAGATGAAGGAGTACAGTGAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0031594 neuromuscular junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070822-6 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Orthologous to human SYNGR3 (synaptogyrin 3).

Ensembl:

ensembl_id ENSDART00000121823

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003331 lncRNA downstream 210755 8202390 ~ 8205228 (-) True XLOC_000996
TCONS_00002909 lncRNA downstream 495281 7915480 ~ 7920702 (-) False XLOC_000984
TCONS_00003330 lncRNA downstream 495283 7915480 ~ 7920700 (-) False XLOC_000984
TCONS_00003332 lncRNA upstream 76216 8504977 ~ 8507689 (-) False XLOC_000998
TCONS_00001581 lncRNA upstream 77661 8506422 ~ 8510066 (-) True XLOC_000998
TCONS_00001583 lncRNA upstream 114391 8543152 ~ 8543611 (-) False XLOC_000999
TCONS_00001584 lncRNA upstream 114926 8543687 ~ 8545359 (-) False XLOC_000999
TCONS_00001586 lncRNA upstream 121256 8550017 ~ 8553298 (-) False XLOC_000999
TCONS_00001578 mRNA downstream 223565 8165340 ~ 8192418 (-) True XLOC_000995
TCONS_00001577 mRNA downstream 274848 8134944 ~ 8141135 (-) True XLOC_000994
TCONS_00001576 mRNA downstream 275220 8127675 ~ 8140763 (-) False XLOC_000994
TCONS_00001575 mRNA downstream 314488 8022320 ~ 8101495 (-) True XLOC_000993
TCONS_00001574 mRNA downstream 395394 8017069 ~ 8020589 (-) True XLOC_000992
TCONS_00001582 mRNA upstream 110910 8539671 ~ 8553295 (-) False XLOC_000999
TCONS_00001585 mRNA upstream 121088 8549849 ~ 8553165 (-) False XLOC_000999
TCONS_00001588 mRNA upstream 126562 8555323 ~ 8566567 (-) True XLOC_001000
TCONS_00001591 mRNA upstream 209401 8638162 ~ 8646941 (-) True XLOC_001003
TCONS_00001592 mRNA upstream 220338 8649099 ~ 8652732 (-) False XLOC_001004
TCONS_00001570 other downstream 440214 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001564 other downstream 495777 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001563 other downstream 496416 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001562 other downstream 497101 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001556 other downstream 614337 7801531 ~ 7801646 (-) True XLOC_000982
TCONS_00001587 other upstream 123989 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001595 other upstream 221348 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001610 other upstream 689339 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001617 other upstream 769098 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001629 other upstream 1031249 9460010 ~ 9486080 (-) False XLOC_001025

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_00315609_00319666.mRNA True 1423 mRNA 0.36 4 CI01000300 314822 ~ 319666 (-)