RNA id: TCONS_00000255


Basic Information

Item Value
RNA id TCONS_00000255
length 1884
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_000142
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10771457 ~ 10776547 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTGTCTTCACAGCTTCAACAACAATGCGAATCATTGGCCTCTTGCAGCGCTGAATATGAACAACTGCAACAACACAGATGAGGAGATAAAGAAAGATGACAAGAAGGAAGAACCAAAAAAGGATGAAAAGAAGGAAGAGAAAAAAGATGAAAAGAAAGATGAGAAGAAAGACGAGAAGAAAGATGAAAAGAAAGATGAGAAGAAAGATGAAAAGAAAGATGAGAAGAAAGATGAGAAAAAGGATGATAAAAAAGATGATAAAAAGAAGGAAGAGGAGAAGCCtaaacatGTGTGGATAATGGATCCAGCAACAGATTTATACTATCACTGGCTGACTATCGTAGCAATACCTGTGTTCTACAACCTAATGTTGCTTGTTACCAGagcCTGTTTTAACGAGCTGCAGGATGATTACACAATCCTATGGATGGTTCTGGACTATACATCAGATGTCATCTACTACCTTGACACATTTGTGAGATCAAGGACAGGTTTCTTGGAGCAAGGCTTACTAGTGAGAGAATCCAAGAAGCTGTGGGAGCACTACAAAAAGTCACCGCAATTCAAATTCGACATATTCTCCATGATACCAACAGACATACTAATGCTGAAAGTGGGTTACAACAATCCAGAGCTGAGATTCAACCGGCTTTTCAAAATGGCTCGTCTGTTTGAGTACTTTGACCGAACTGAAACCAGAACCAACTTCCCAAACATCTTTCGAATCAGCAATCTCGTCCTGTACATCCTTATCATCATCCACTGGAACGGCTGTATCTTTTTCGCCATTTCAAAAACTCTTGGCTTTGGCTCGGACTCTTGGGTGTATCCCAACATCAGTGACCCCGAGTTTGGTCGTCTTGGCAGAAAGTACATCTATTGCTTGTACTGGTCCACTCTCACGCTCACCACCATTGGAGAAACACCACCACCTGTCAGAGACATTGAGTACTTTTTTGTCGTTTCTGATTTCCTCATTGGCGTGTTGATCTTTGCCACCATCGTTGGTAACGTTGGTGCTATGATTTCCAACATGAATGCATCCCGCGCAGAGTTCCAGGCCAAGATTGACTCAATCAAGCAGTACATGCAGTTCAGAAAGGTCAGCAAAGATCTGGAGGCGCGTGTCGTGAAGTGGTTTGACTACCTTTGGACCGAACAGAAGACTTGCGATGAAAAGGAGGTGCTCAAGTACCTCCCAGACAAACTCAAGGCAGAGATCGCCATCAACGTGCATCTGGAGACTCTTCGGAAGGTGCGTATCTTTCAGGATTGCGAGGCGGGTCTTCTTGTTGAGCTTGTCCTTAAACTTCAACCGCAGGTTTTCAGCCCTGGCGACTACATCTGCAAGAAGGGAGACATCGGGAGAGAAATGTACATTATAAAAGAAGGCAAACTAGCTGTGGTGGCCGATGATGGAGTCACGCAGTTTGTGGTCCTGAGCGATGGCGCTTACTTTGGTGAGATTAGCATCCTCGGAATCAAAGGAAGTAAAGCTGGAAATCGCAGGACTGCAAACATACGTAGTGTGGGATACTCTGATCTTTTTGCGCTCTCCAAAGATGACCTAATGGATGCTTTATCGGAGTACCCAGAAGCCAAGAAGGCACTAGAGGAGAAAGGTAGGGCTATTTTGATGAAAGACAATCTTATCGATGAGGCTGCTGCCAATGCTGGCGCAGACGCCAAAGACCTAGAAGAAAAGGTGAATTTGCTTGGGACGAACCTAGATGTGATGCAGACTAAATTTGCTCGTCTTATGGCAGATTGGACTGCCAGCCAGAGCAGGATCAAACAGAGGCTCACCAACATGGAGGCCCGCGTGAAGACTCTTAGGGAGGAGGATTTGGACGAGGTCGTAGAGGATAAGAAGGACAAATAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000027050

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003036 lncRNA upstream 90616 10645364 ~ 10680841 (+) True XLOC_000138
TCONS_00003035 lncRNA upstream 103429 10645264 ~ 10668028 (+) True XLOC_000137
TCONS_00000251 lncRNA upstream 107932 10662312 ~ 10663525 (+) True XLOC_000139
TCONS_00002812 lncRNA upstream 153527 10617524 ~ 10617930 (+) True XLOC_000136
TCONS_00003034 lncRNA upstream 308575 10462044 ~ 10462882 (+) True XLOC_000135
TCONS_00002813 lncRNA downstream 4381 10780928 ~ 10787317 (+) True XLOC_000143
TCONS_00002814 lncRNA downstream 1156770 11933317 ~ 11933676 (+) True XLOC_000152
TCONS_00003037 lncRNA downstream 1269945 12046492 ~ 12048509 (+) False XLOC_000155
TCONS_00000280 lncRNA downstream 1395775 12172322 ~ 12181039 (+) False XLOC_000159
TCONS_00000284 lncRNA downstream 1407950 12184497 ~ 12187708 (+) False XLOC_000159
TCONS_00000254 mRNA upstream 32236 10720294 ~ 10739221 (+) True XLOC_000141
TCONS_00000252 mRNA upstream 74854 10683843 ~ 10696603 (+) False XLOC_000140
TCONS_00000250 mRNA upstream 274648 10378706 ~ 10496809 (+) True XLOC_000134
TCONS_00000249 mRNA upstream 274658 10378706 ~ 10496799 (+) False XLOC_000134
TCONS_00000248 mRNA upstream 322933 10378706 ~ 10448524 (+) False XLOC_000134
TCONS_00000257 mRNA downstream 331141 11107688 ~ 11117930 (+) True XLOC_000144
TCONS_00000260 mRNA downstream 883314 11659861 ~ 11668782 (+) True XLOC_000147
TCONS_00000261 mRNA downstream 913813 11690360 ~ 11707665 (+) False XLOC_000148
TCONS_00000262 mRNA downstream 915175 11691722 ~ 11707665 (+) False XLOC_000148
TCONS_00000264 mRNA downstream 934679 11711226 ~ 11733130 (+) False XLOC_000149
TCONS_00000253 other upstream 75129 10683995 ~ 10696328 (+) True XLOC_000140
TCONS_00000247 other upstream 407606 10363720 ~ 10363851 (+) True XLOC_000133
TCONS_00000245 other upstream 448185 10318077 ~ 10323272 (+) False XLOC_000132
TCONS_00000236 other upstream 683932 10082478 ~ 10087525 (+) False XLOC_000127
TCONS_00000232 other upstream 713649 10054019 ~ 10057808 (+) False XLOC_000126
TCONS_00000258 other downstream 603950 11380497 ~ 11380611 (+) True XLOC_000145
TCONS_00000259 other downstream 692989 11469536 ~ 11469650 (+) True XLOC_000146
TCONS_00000263 other downstream 915201 11691748 ~ 11695168 (+) True XLOC_000148
TCONS_00000271 other downstream 1238569 12015116 ~ 12033278 (+) False XLOC_000154
TCONS_00000272 other downstream 1238609 12015156 ~ 12031300 (+) True XLOC_000154

Expression Profile

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