RNA id: TCONS_00060291


Basic Information

Item Value
RNA id TCONS_00060291
length 847
lncRNA type sense_over
GC content 0.44
exon number 6
gene id XLOC_031032
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23788592 ~ 23805387 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACGGAACGAGGACACAACACCTAAAACAGCAGTAATGAAACTTCTTCAAAATGCAAATACCTTTCTTCTTGTTGTGGCTGGACTCTCTTTTGCTggGCTCATATATTTGGGCTACACCTCCTCTTCCATCAGATTTAAAGTACAAAGATTCTGCTTCAAcataacaaagGAACACCAGGAAAGTGTTCTCTTGCAGTTGCCACAAGGGCTTTCATTCAATCAGCCCAGTGTAGTGGGATATACAGTGTTTCTCAAAGAATTCCTGGAGTCTGCAGAGCAGAATTATTTTGTTGGATTTCATGTGCACTATTATATCTTCACCGATCATCCAGAAGAGGTTCCTGATGTGAAACTGGGTGAAGGACATCAGTTGACGGTGATGACAGTTGATAGTTCTAACAGATGGCAGGAGATGACATTGCGGAGAATGGAGAGGCTGGAGAAACTAATTGAGAGTCGATTGGTGAAGGAAGCTGACTATGTTTTCAGCCTTGACGTTGATACAAAGTTCTACGCCCGCTGGGGTGCAGAGACTTTGGGTCGTCTTGTAGGTGTGCTTCATCCTGGTTACTATCAAACACCACGTGAGCAATTCCCATATGAGCGAAGGCCTGAGTCTCAAGCGTTTATCCCTTATTCTGATGGTGATTATTATTATGGTGGAGCTGTGCTTGGTGGTGCAGTGAAAGATGTATATGAGGTTGCTAAGACCTGCAGAGAGCAGCTGGACATTGATGCAGCTAAATCCATTGAGGCAGCATGGCAAGAGGAGTCCCATTTGAACAAATACTTTGTTTATAACAAACCCAGTAAACTGCTTTCACCCGAGTACCTGTGGCAGGACT

Function

GO:

id name namespace
GO:0030259 lipid glycosylation biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0031982 vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061993 lncRNA downstream 332955 23446244 ~ 23456234 (-) True XLOC_031017
TCONS_00060261 lncRNA downstream 431787 23353570 ~ 23357402 (-) False XLOC_031016
TCONS_00061531 lncRNA downstream 675490 23113037 ~ 23113699 (-) False XLOC_031009
TCONS_00060248 lncRNA downstream 814548 22956895 ~ 22974641 (-) False XLOC_031008
TCONS_00060244 lncRNA downstream 819441 22956895 ~ 22969748 (-) False XLOC_031008
TCONS_00061994 lncRNA upstream 271296 24076625 ~ 24085954 (-) False XLOC_031041
TCONS_00061995 lncRNA upstream 271296 24076625 ~ 24086051 (-) False XLOC_031041
TCONS_00061996 lncRNA upstream 271296 24076625 ~ 24086136 (-) True XLOC_031041
TCONS_00060318 lncRNA upstream 435712 24241041 ~ 24244557 (-) True XLOC_031050
TCONS_00061997 lncRNA upstream 456902 24262231 ~ 24267113 (-) True XLOC_031052
TCONS_00060286 mRNA downstream 5450 23776680 ~ 23783739 (-) True XLOC_031031
TCONS_00060283 mRNA downstream 39841 23738167 ~ 23749348 (-) True XLOC_031028
TCONS_00060282 mRNA downstream 59599 23721515 ~ 23729590 (-) True XLOC_031027
TCONS_00060281 mRNA downstream 63709 23721515 ~ 23725480 (-) False XLOC_031027
TCONS_00060279 mRNA downstream 73328 23702295 ~ 23715861 (-) False XLOC_031026
TCONS_00060292 mRNA upstream 34441 23839770 ~ 23840920 (-) False XLOC_031033
TCONS_00060293 mRNA upstream 34458 23839787 ~ 23843636 (-) True XLOC_031033
TCONS_00060294 mRNA upstream 44318 23849647 ~ 23855447 (-) True XLOC_031034
TCONS_00060295 mRNA upstream 69467 23874796 ~ 23876085 (-) False XLOC_031035
TCONS_00060296 mRNA upstream 69507 23874836 ~ 23878809 (-) True XLOC_031035
TCONS_00060285 other downstream 18632 23768377 ~ 23770557 (-) True XLOC_031030
TCONS_00060284 other downstream 30602 23757933 ~ 23758587 (-) True XLOC_031029
TCONS_00060280 other downstream 74190 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060260 other downstream 447566 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060254 other downstream 566370 23222701 ~ 23222819 (-) True XLOC_031012
TCONS_00060312 other upstream 394604 24199933 ~ 24201432 (-) True XLOC_031046
TCONS_00060314 other upstream 407848 24213177 ~ 24218717 (-) True XLOC_031047
TCONS_00060319 other upstream 447130 24252459 ~ 24259292 (-) True XLOC_031051
TCONS_00060324 other upstream 684546 24489875 ~ 24489974 (-) True XLOC_031056
TCONS_00060328 other upstream 729129 24534458 ~ 24535877 (-) True XLOC_031058

Expression Profile

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