RNA id: TCONS_00060285


Basic Information

Item Value
RNA id TCONS_00060285
length 991
RNA type unprocessed_pseudogene
GC content 0.31
exon number 3
gene id XLOC_031030
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23768377 ~ 23770557 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTGTTGTGcttttatatgtttttgttttcttgcagGCTCATATATTTGGGCTACACCTCCACTTCCATCAGTTATGTTTTTTATTGATCTCCTGTTTCTTAGCATAACAAAGGAGAACCAGGAAAGTGTTCTCTTGCAGTTGCCACAAGGGTGAGTACAAACACTACTTTCAATTGCGCTGCTCTAATTTTTGTGATCTGTATGTTTAGATGTAGTAAACTAAATTTGATTCTTAAACAGGAAATGTGATCTACTCAACACTTGGCTCAAGTTTTGTACACAGACGTTATTCTTAGGAAACTTCCTTATTTGATTTATATACCAGCTTCGTTAAACATACAATGGGACGTCTGGATTAAACTGTTTTCACCCGTGTACCTGTGGCAAGACTTCAAACTGTAGACAAAtgaggtcaaaatcattagctcTTCTCAAGTTATTAAACATTATGCTGCTGTTCGTCCAAACCCATAGTTTACTGAAACGTAACAgattttatgctttatattttaaactggtgtaattttaatgtttttgtagtCTTTAGCAAAAACTGTGGCGAAATATATCTCTCATAAGCTATacatcaacatttgaagtgaccATTTGCTGAAAAAAGCCATTTAGATAAGTGTATAGTGTTGgtttacaacataaaaaaaattcaaaaactaTTATTGTTATACCACAATACCTTATCAAAACTATCTTTTTCCCTCagtaaattcaaataaaacataAGTTGTCTACAAATTATAAACTCTTACTAAAACTCAGTTAAAGGTACTTTTGCAAATGtgaatttaaataatgttttacatacagtatattccAAAAATCATCATGATCTATGGTTCTTACTAAATGGAAATAACAAATCAAAACTAAAAACGAATTGTCAGTCTGGGTTTGGGTTTCCTCAAGCATTGTGACAGTATGTGAACTGGTGTgatatattatgaaatattaaattgATAATTTGCTAAAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140137

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061993 lncRNA downstream 312143 23446244 ~ 23456234 (-) True XLOC_031017
TCONS_00060261 lncRNA downstream 410975 23353570 ~ 23357402 (-) False XLOC_031016
TCONS_00061531 lncRNA downstream 654678 23113037 ~ 23113699 (-) False XLOC_031009
TCONS_00060248 lncRNA downstream 793736 22956895 ~ 22974641 (-) False XLOC_031008
TCONS_00060291 lncRNA upstream 18632 23789189 ~ 23805329 (-) False XLOC_031032
TCONS_00061994 lncRNA upstream 306068 24076625 ~ 24085954 (-) False XLOC_031041
TCONS_00061995 lncRNA upstream 306068 24076625 ~ 24086051 (-) False XLOC_031041
TCONS_00061996 lncRNA upstream 306068 24076625 ~ 24086136 (-) True XLOC_031041
TCONS_00060318 lncRNA upstream 470484 24241041 ~ 24244557 (-) True XLOC_031050
TCONS_00060283 mRNA downstream 19029 23738167 ~ 23749348 (-) True XLOC_031028
TCONS_00060282 mRNA downstream 38787 23721515 ~ 23729590 (-) True XLOC_031027
TCONS_00060281 mRNA downstream 42897 23721515 ~ 23725480 (-) False XLOC_031027
TCONS_00060279 mRNA downstream 52516 23702295 ~ 23715861 (-) False XLOC_031026
TCONS_00060278 mRNA downstream 53350 23702295 ~ 23715027 (-) False XLOC_031026
TCONS_00060286 mRNA upstream 6123 23776680 ~ 23783739 (-) True XLOC_031031
TCONS_00060287 mRNA upstream 18035 23788592 ~ 23795688 (-) False XLOC_031032
TCONS_00060288 mRNA upstream 18035 23788592 ~ 23800376 (-) False XLOC_031032
TCONS_00060290 mRNA upstream 18726 23789283 ~ 23805387 (-) True XLOC_031032
TCONS_00060292 mRNA upstream 69213 23839770 ~ 23840920 (-) False XLOC_031033
TCONS_00060284 other downstream 9790 23757933 ~ 23758587 (-) True XLOC_031029
TCONS_00060280 other downstream 53378 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060260 other downstream 426754 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060254 other downstream 545558 23222701 ~ 23222819 (-) True XLOC_031012
TCONS_00060226 other downstream 1329782 22437311 ~ 22438595 (-) True XLOC_030997
TCONS_00060289 other upstream 18632 23789189 ~ 23795690 (-) False XLOC_031032
TCONS_00060312 other upstream 429376 24199933 ~ 24201432 (-) True XLOC_031046
TCONS_00060314 other upstream 442620 24213177 ~ 24218717 (-) True XLOC_031047
TCONS_00060319 other upstream 481902 24252459 ~ 24259292 (-) True XLOC_031051
TCONS_00060324 other upstream 719318 24489875 ~ 24489974 (-) True XLOC_031056

Expression Profile

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