RNA id: TCONS_00060260


Basic Information

Item Value
RNA id TCONS_00060260
length 567
RNA type processed_transcript
GC content 0.41
exon number 5
gene id XLOC_031015
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23331153 ~ 23341623 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAACGCGCGGCATTTGCAAACACGTGCTAATGACGCAATCAATTGGAGACGCCTTTTCCCGCGAACTCATCTCATCTCTCCTGGGAGAGCAGTCTTTATAGGAAACAtgccctttgtcttcatgctgggATTAAGAAAAAACAGAAAGCGTAAAATACCTCAAGAGGATGCAGAACATTACATTTGTTGTAAAAGTGACAAACCTGCAAGTGCAATTCATCAACAATTACAAAGGAGGATGAGTTTTCACCACTGAAGCTTTATTCAGAGGGGATTTTGTTCTTGATTACAAGTTTGGGTGCATGGATGCATCGAAAGAAGATGGGTCTTAAGGGAGACTTGTAAATGATGACCACAAAGCTCCTAACTGCAAAATGAAAATCATATCTTTGCTGTGTGCAACATACTTCCAGGAGAAGATATAACCTACAATTATGGAGATTCTGGTTATGTCCCATAATGTTCTGTCTCCTCACCTGCTTTGGACAACGTGAAGATGAGTGATCCTCACAAACAAACTGAGCCACAACAGTCAGACAAAGCAAGAAGATCAGGGAATAAGACG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000146390

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061531 lncRNA downstream 217454 23113037 ~ 23113699 (-) False XLOC_031009
TCONS_00060248 lncRNA downstream 356512 22956895 ~ 22974641 (-) False XLOC_031008
TCONS_00060244 lncRNA downstream 361405 22956895 ~ 22969748 (-) False XLOC_031008
TCONS_00060246 lncRNA downstream 361729 22956895 ~ 22969424 (-) False XLOC_031008
TCONS_00060261 lncRNA upstream 11947 23353570 ~ 23357402 (-) False XLOC_031016
TCONS_00061993 lncRNA upstream 104621 23446244 ~ 23456234 (-) True XLOC_031017
TCONS_00060291 lncRNA upstream 447566 23789189 ~ 23805329 (-) False XLOC_031032
TCONS_00061994 lncRNA upstream 735002 24076625 ~ 24085954 (-) False XLOC_031041
TCONS_00061995 lncRNA upstream 735002 24076625 ~ 24086051 (-) False XLOC_031041
TCONS_00060259 mRNA downstream 13676 23283890 ~ 23317477 (-) True XLOC_031014
TCONS_00060258 mRNA downstream 51055 23268121 ~ 23280098 (-) False XLOC_031013
TCONS_00060257 mRNA downstream 51055 23268121 ~ 23280098 (-) True XLOC_031013
TCONS_00060256 mRNA downstream 53214 23268121 ~ 23277939 (-) False XLOC_031013
TCONS_00060255 mRNA downstream 53768 23268121 ~ 23277385 (-) False XLOC_031013
TCONS_00060262 mRNA upstream 12022 23353645 ~ 23362602 (-) False XLOC_031016
TCONS_00060263 mRNA upstream 15186 23356809 ~ 23429228 (-) True XLOC_031016
TCONS_00060264 mRNA upstream 115489 23457112 ~ 23464970 (-) False XLOC_031018
TCONS_00060265 mRNA upstream 115598 23457221 ~ 23485161 (-) False XLOC_031018
TCONS_00060266 mRNA upstream 126422 23468045 ~ 23473312 (-) False XLOC_031018
TCONS_00060254 other downstream 108334 23222701 ~ 23222819 (-) True XLOC_031012
TCONS_00060226 other downstream 892558 22437311 ~ 22438595 (-) True XLOC_030997
TCONS_00060225 other downstream 893170 22435786 ~ 22437983 (-) False XLOC_030997
TCONS_00060223 other downstream 1096648 22234407 ~ 22234505 (-) True XLOC_030995
TCONS_00060221 other downstream 1234245 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060280 other upstream 361834 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060284 other upstream 416310 23757933 ~ 23758587 (-) True XLOC_031029
TCONS_00060285 other upstream 426754 23768377 ~ 23770557 (-) True XLOC_031030
TCONS_00060289 other upstream 447566 23789189 ~ 23795690 (-) False XLOC_031032
TCONS_00060312 other upstream 858310 24199933 ~ 24201432 (-) True XLOC_031046

Expression Profile

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