RNA id: TCONS_00060226


Basic Information

Item Value
RNA id TCONS_00060226
length 311
RNA type processed_transcript
GC content 0.50
exon number 3
gene id XLOC_030997
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 22435786 ~ 22438595 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgttgcctcccagcaaaaatgtttctggttcgagcctcggctgggtcagttggcatttctgtgtgaagtttgcatgttctccccgtgttggcgtgggtttcctccgggtgctccggtttcccccacaagacatgcggtacaggtgaattggctcagattgtgatggacctggaatgcgacaccagttactcttaagtcaagaaccaaatgaaGCACCAGAGTACAGATTATGGAGGTTCCTTGTAAAGATGAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAGAAAGACCACATCAAGATCTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000142896

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061990 lncRNA downstream 202153 22232159 ~ 22235158 (-) False XLOC_030995
TCONS_00061989 lncRNA downstream 202259 22230690 ~ 22235052 (-) False XLOC_030995
TCONS_00060220 lncRNA downstream 354504 22081595 ~ 22082807 (-) True XLOC_030992
TCONS_00060218 lncRNA downstream 391677 22040277 ~ 22045634 (-) True XLOC_030991
TCONS_00060217 lncRNA downstream 395455 22040277 ~ 22041856 (-) False XLOC_030991
TCONS_00061991 lncRNA upstream 15235 22453830 ~ 22455994 (-) True XLOC_030998
TCONS_00061992 lncRNA upstream 16971 22455566 ~ 22457289 (-) True XLOC_030999
TCONS_00061530 lncRNA upstream 67850 22506445 ~ 22510064 (-) True XLOC_031001
TCONS_00060247 lncRNA upstream 518300 22956895 ~ 22969242 (-) False XLOC_031008
TCONS_00060246 lncRNA upstream 518300 22956895 ~ 22969424 (-) False XLOC_031008
TCONS_00060224 mRNA downstream 67395 22363015 ~ 22369916 (-) True XLOC_030996
TCONS_00060222 mRNA downstream 306374 22115250 ~ 22130937 (-) True XLOC_030994
TCONS_00060219 mRNA downstream 354393 22073710 ~ 22082918 (-) False XLOC_030992
TCONS_00060216 mRNA downstream 384459 22027588 ~ 22052852 (-) False XLOC_030991
TCONS_00060215 mRNA downstream 409954 22021142 ~ 22027357 (-) True XLOC_030990
TCONS_00060227 mRNA upstream 26491 22465086 ~ 22501663 (-) True XLOC_031000
TCONS_00060228 mRNA upstream 76752 22515347 ~ 22544151 (-) True XLOC_031002
TCONS_00060229 mRNA upstream 112019 22550614 ~ 22573624 (-) False XLOC_031003
TCONS_00060230 mRNA upstream 112022 22550617 ~ 22573624 (-) False XLOC_031003
TCONS_00060231 mRNA upstream 112022 22550617 ~ 22573673 (-) False XLOC_031003
TCONS_00060223 other downstream 202806 22234407 ~ 22234505 (-) True XLOC_030995
TCONS_00060221 other downstream 340403 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060212 other downstream 485177 21943382 ~ 21952134 (-) False XLOC_030988
TCONS_00060206 other downstream 699966 21736359 ~ 21737345 (-) True XLOC_030985
TCONS_00060202 other downstream 1144066 21293130 ~ 21293245 (-) True XLOC_030982
TCONS_00060254 other upstream 784106 23222701 ~ 23222819 (-) True XLOC_031012
TCONS_00060260 other upstream 892558 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060280 other upstream 1264862 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060284 other upstream 1319338 23757933 ~ 23758587 (-) True XLOC_031029
TCONS_00060285 other upstream 1329782 23768377 ~ 23770557 (-) True XLOC_031030

Expression Profile

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