RNA id: TCONS_00060228


Basic Information

Item Value
RNA id TCONS_00060228
length 1926
RNA type mRNA
GC content 0.48
exon number 10
gene id XLOC_031002
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 22515347 ~ 22544151 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGTGCTCAGTCAGATGGCAGTGGAGGAGAGACCAGAGTGCATCAGAATGGGCGTCCTGCCCCTCAAAAACACATCTGCTCATTGAGATTTAGCCACGGGACACCAGAAAAGCAGCTGCTGAACAGTGAAAGGATGTTTTCTGTGATCTGGAGGATCCTACTGGAGCTCTTACTGGTTTGCTGGATGTTTGAAGGGGTCATCAGGTGTGTGTTTAGTAAGGAGCTGAAATCTCCCAGTGTTAGGACGAAGCCCATGTCACCATCAGATTTTCTGGATAAATTAATGGGAAAGACATCTGGATATGATGCTCGAATAAGGCCCAACTTTAAAGGTCCTCCTGTAAATGTCACCTGCAACATTTTCATCAACAGCTTTGGCTCGATCACAGAGACTACCATGGATTACCGGCTGAACGTTTTTCTACGGCAGCAGTGGAATGACCCACGACTAGCTTATAAAGAATACCCAGACGATTCCCTGGATCTGGACCCATCCATGCTGGACTCcatctggaagccagacttgttCTTCGCCAATGAGAAAGGCGCCAACTTTCATGAGGTCACCACAGACAACAAGCTGCTGAGAATTTTCCAGAACGGAAACGTGCTGTATAGCATCAGACTCACGCTGATTCTGTCGTGTCCTATGGATCTGAAGAATTTCCCAATGGACACTCAGACCTGCACTATGCAGTTAGAGAGCTTTGGCTACACTATGAATGATCTGATATTTCAGTGGTTGGACGAAGGCCCGGTGCAAGTAGCTGATGACCTTATGCTGCCCCAGTTTGTCCTCAAAGAAGAGAAAGACTTGGGATACTGTACAAAGCACTACAACACTGGTAAGTTCACCTGTATAGAGGTGAAGTTTCATCTGGAGAGGCAGATGGGTTATTACCTGATCCAGATGTACATTCCCAGCCTTTTAACAGTGATCCTGTCATGGGTCTCTTTCTGGATCAACATGGATGCCGCCCCGGCCCGAGTCGGGCTGGGCATCACCACAGTTCTTACCATGACCACACAGAGCTCAGGTTCTAGAGCATCACTGCCTAAGGTGTCCTATGTGAAGGCCATTGACATCTGGATGGCAGTGTGTCTGCTGTTCGTGTTTGCTGCTTTGTTGGAGTACGCAGCGGTTAACTTCGTTTCAAGGCAATATAAAGAATTCTTCCGACTGAGGAGGAAACTGCGGCAGGAGCAACGCAACAGAGCTGCCTCTGGTCAAGCTGGAGCAGCAGAAACGAAGAACAAGAGTAACAACGTCACAGGAGGCACACCGAGCAGAAACGCACAACGCCAGTGCAGCGCCTGCGCACGGGAAGAGCAGTTGGCCTCACAGAATCAGGACTTGTACTTTCCGGGCTTTGGGATAGACACGAGTCTGTCTGGAGACGGGCCTCTCTCTGAAGCTGCTGCCATGTTTGCTGGTTTGCCACCCGGTCATGCCCTGTTTGACATTCGCCGGCGCTTTGTGGAACAAGCGAAACGGATCGACACCATCTCACGAGCCGTCTTCCCCCTCAGCTTCCTCGTATTCAACGTGTTTTACTGGGTCACTTATAAAGTGCTTCGAAACGAAGACATTCACCTTGCACTGCGACCCTGACACCCTTTAGGACTTCTGAACTTCCCGTTATACCTTCTTGTGAACCAGTTTTGGTCCAGCGTGAGGATGAGCTCCTTTATCAAAGACATTTATAAAATCAAACCAGTCTATGAAGCGGTGCAACAAGTTCTCTCTGCATGAGTGAGAATATATGCATGAGTCTGAGAGCACTTTAACAAAGAGCTAAATAAACCTTTAGCTTATATGAAGAACGGCTGATTCACTCCTGACCTttgctctttttttgtttttgcacagaGCACATTTGTTCTTGTccgttgtaaaaaaaaataaatgttatatatgaATTTTC

Function

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0060012 synaptic transmission, glycinergic biological_process
GO:0006811 ion transport biological_process
GO:0043200 response to amino acid biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022824 transmitter-gated ion channel activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0016594 glycine binding molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0016933 extracellularly glycine-gated ion channel activity molecular_function
GO:0016934 extracellularly glycine-gated chloride channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020402-2 Enables extracellularly glycine-gated ion channel activity. Predicted to be involved in several processes, including chloride transmembrane transport; glycinergic synaptic transmission; and neuropeptide signaling pathway. Predicted to act upstream of or within chloride transport. Predicted to be located in cell projection and postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of chloride channel complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in brain; hindbrain; retinal ganglion cell layer; retinal inner nuclear layer; and spinal cord. Orthologous to human GLRA4 (glycine receptor alpha 4 (pseudogene)).

Ensembl:

ensembl_id ENSDART00000006474

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061530 lncRNA downstream 5283 22506445 ~ 22510064 (-) True XLOC_031001
TCONS_00061992 lncRNA downstream 58058 22455566 ~ 22457289 (-) True XLOC_030999
TCONS_00061991 lncRNA downstream 59353 22453830 ~ 22455994 (-) True XLOC_030998
TCONS_00061990 lncRNA downstream 280189 22232159 ~ 22235158 (-) False XLOC_030995
TCONS_00061989 lncRNA downstream 280295 22230690 ~ 22235052 (-) False XLOC_030995
TCONS_00060247 lncRNA upstream 412744 22956895 ~ 22969242 (-) False XLOC_031008
TCONS_00060246 lncRNA upstream 412744 22956895 ~ 22969424 (-) False XLOC_031008
TCONS_00060244 lncRNA upstream 412744 22956895 ~ 22969748 (-) False XLOC_031008
TCONS_00060248 lncRNA upstream 412744 22956895 ~ 22974641 (-) False XLOC_031008
TCONS_00060245 lncRNA upstream 416802 22960953 ~ 22967609 (-) True XLOC_031008
TCONS_00060227 mRNA downstream 13684 22465086 ~ 22501663 (-) True XLOC_031000
TCONS_00060224 mRNA downstream 145431 22363015 ~ 22369916 (-) True XLOC_030996
TCONS_00060222 mRNA downstream 384410 22115250 ~ 22130937 (-) True XLOC_030994
TCONS_00060219 mRNA downstream 432429 22073710 ~ 22082918 (-) False XLOC_030992
TCONS_00060216 mRNA downstream 462495 22027588 ~ 22052852 (-) False XLOC_030991
TCONS_00060229 mRNA upstream 6463 22550614 ~ 22573624 (-) False XLOC_031003
TCONS_00060230 mRNA upstream 6466 22550617 ~ 22573624 (-) False XLOC_031003
TCONS_00060231 mRNA upstream 6466 22550617 ~ 22573673 (-) False XLOC_031003
TCONS_00060232 mRNA upstream 13198 22557349 ~ 22573624 (-) True XLOC_031003
TCONS_00060233 mRNA upstream 41118 22585269 ~ 22590124 (-) False XLOC_031004
TCONS_00060226 other downstream 76752 22437311 ~ 22438595 (-) True XLOC_030997
TCONS_00060225 other downstream 77364 22435786 ~ 22437983 (-) False XLOC_030997
TCONS_00060223 other downstream 280842 22234407 ~ 22234505 (-) True XLOC_030995
TCONS_00060221 other downstream 418439 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060212 other downstream 563213 21943382 ~ 21952134 (-) False XLOC_030988
TCONS_00060254 other upstream 678550 23222701 ~ 23222819 (-) True XLOC_031012
TCONS_00060260 other upstream 787002 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060280 other upstream 1159306 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060284 other upstream 1213782 23757933 ~ 23758587 (-) True XLOC_031029
TCONS_00060285 other upstream 1224226 23768377 ~ 23770557 (-) True XLOC_031030

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000339_01327907_01343305.mRNA True 3460 mRNA 0.44 11 CI01000339 1327717 ~ 1344940 (-)
bowfin (Amia calva) AMCG00014207 True 3309 mRNA 0.39 9 CM030128.1 4460775 ~ 4498956 (+)