Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00060245 |
| length | 926 |
| lncRNA type | retained_intron |
| GC content | 0.51 |
| exon number | 2 |
| gene id | XLOC_031008 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 22956895 ~ 22974641 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0043226 | organelle | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-100922-206 | Predicted to be involved in regulation of lysosomal lumen pH. Predicted to act upstream of or within regulation of toll-like receptor signaling pathway. |
| ensembl_id | ENSDART00000146753 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061530 | lncRNA | downstream | 450889 | 22506445 ~ 22510064 (-) | True | XLOC_031001 |
| TCONS_00061992 | lncRNA | downstream | 503664 | 22455566 ~ 22457289 (-) | True | XLOC_030999 |
| TCONS_00061991 | lncRNA | downstream | 504959 | 22453830 ~ 22455994 (-) | True | XLOC_030998 |
| TCONS_00061990 | lncRNA | downstream | 725795 | 22232159 ~ 22235158 (-) | False | XLOC_030995 |
| TCONS_00061989 | lncRNA | downstream | 725901 | 22230690 ~ 22235052 (-) | False | XLOC_030995 |
| TCONS_00061531 | lncRNA | upstream | 145428 | 23113037 ~ 23113699 (-) | False | XLOC_031009 |
| TCONS_00060261 | lncRNA | upstream | 385961 | 23353570 ~ 23357402 (-) | False | XLOC_031016 |
| TCONS_00061993 | lncRNA | upstream | 478635 | 23446244 ~ 23456234 (-) | True | XLOC_031017 |
| TCONS_00060291 | lncRNA | upstream | 821580 | 23789189 ~ 23805329 (-) | False | XLOC_031032 |
| TCONS_00061994 | lncRNA | upstream | 1109016 | 24076625 ~ 24085954 (-) | False | XLOC_031041 |
| TCONS_00060242 | mRNA | downstream | 8797 | 22871718 ~ 22952156 (-) | False | XLOC_031007 |
| TCONS_00060243 | mRNA | downstream | 78743 | 22873814 ~ 22882210 (-) | True | XLOC_031007 |
| TCONS_00060241 | mRNA | downstream | 92303 | 22851857 ~ 22868650 (-) | True | XLOC_031006 |
| TCONS_00060240 | mRNA | downstream | 339536 | 22609826 ~ 22621417 (-) | True | XLOC_031005 |
| TCONS_00060238 | mRNA | downstream | 341074 | 22605530 ~ 22619879 (-) | False | XLOC_031005 |
| TCONS_00060249 | mRNA | upstream | 140195 | 23107804 ~ 23117078 (-) | False | XLOC_031009 |
| TCONS_00060250 | mRNA | upstream | 149032 | 23116641 ~ 23118290 (-) | True | XLOC_031009 |
| TCONS_00060251 | mRNA | upstream | 208884 | 23176493 ~ 23179319 (-) | False | XLOC_031010 |
| TCONS_00060252 | mRNA | upstream | 209335 | 23176944 ~ 23179335 (-) | True | XLOC_031010 |
| TCONS_00060253 | mRNA | upstream | 228458 | 23196067 ~ 23200880 (-) | True | XLOC_031011 |
| TCONS_00060226 | other | downstream | 522358 | 22437311 ~ 22438595 (-) | True | XLOC_030997 |
| TCONS_00060225 | other | downstream | 522970 | 22435786 ~ 22437983 (-) | False | XLOC_030997 |
| TCONS_00060223 | other | downstream | 726448 | 22234407 ~ 22234505 (-) | True | XLOC_030995 |
| TCONS_00060221 | other | downstream | 864045 | 22087656 ~ 22096908 (-) | True | XLOC_030993 |
| TCONS_00060212 | other | downstream | 1008819 | 21943382 ~ 21952134 (-) | False | XLOC_030988 |
| TCONS_00060254 | other | upstream | 255092 | 23222701 ~ 23222819 (-) | True | XLOC_031012 |
| TCONS_00060260 | other | upstream | 363544 | 23331153 ~ 23341623 (-) | True | XLOC_031015 |
| TCONS_00060280 | other | upstream | 735848 | 23703457 ~ 23714999 (-) | True | XLOC_031026 |
| TCONS_00060284 | other | upstream | 790324 | 23757933 ~ 23758587 (-) | True | XLOC_031029 |
| TCONS_00060285 | other | upstream | 800768 | 23768377 ~ 23770557 (-) | True | XLOC_031030 |
