RNA id: TCONS_00060250


Basic Information

Item Value
RNA id TCONS_00060250
length 534
RNA type mRNA
GC content 0.55
exon number 2
gene id XLOC_031009
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23107804 ~ 23118290 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCTCCCGTTACACCCGGGCCGCGCGTCCCGCCCGCTCTTAAGCCTCCGTTTGGTCGCTCGGCGTGTGGACTGCTGTCatatgatgttgttgttgttgtgttttttgtaaGCCTCTTCAATGCAGCGCCCTCACCATGTTTGCCCCGTCTCGCGAGCCCGGACTGCCTCTCCGGTAGCAGCAGGTGGACGCACCTCTCGCGCCTCGGAGCCCCTCTACCACTCCATTTTATCCCCTCGCGCTCCAGGGTTTCCAGGAAACAAACAAAGTTTGTAGTCCTATGGAAACGGCCATAATCGAGACGATGCCGTGCCATAACCAGCAGCTTAATAATAACAGTGAGAGCCCTGAACACGCCGCCAAGCACGTCCGCTTTGCCCAGAGCAGCGCTGCCGCTGCGGAGACCTGTCAAAACGACGCCGAACAGCCTGAATACCAAACCACAAGCGAAATCCATCAACAAATAGGACCTCAGCTGAAGCTGTTGCCATTAAACGACCAAATACGAGAACTTCAGACTATCATTCGGGACAA

Function

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism

ZFIN:

id description
ZDB-GENE-040426-2411 Predicted to enable GTP binding activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be located in nucleus. Predicted to be active in cytosol. Orthologous to human UPRT (uracil phosphoribosyltransferase homolog).

Ensembl:

ensembl_id ENSDART00000132857

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061531 lncRNA downstream 2942 23113037 ~ 23113699 (-) False XLOC_031009
TCONS_00060248 lncRNA downstream 142000 22956895 ~ 22974641 (-) False XLOC_031008
TCONS_00060244 lncRNA downstream 146893 22956895 ~ 22969748 (-) False XLOC_031008
TCONS_00060246 lncRNA downstream 147217 22956895 ~ 22969424 (-) False XLOC_031008
TCONS_00060247 lncRNA downstream 147399 22956895 ~ 22969242 (-) False XLOC_031008
TCONS_00060261 lncRNA upstream 235280 23353570 ~ 23357402 (-) False XLOC_031016
TCONS_00061993 lncRNA upstream 327954 23446244 ~ 23456234 (-) True XLOC_031017
TCONS_00060291 lncRNA upstream 670899 23789189 ~ 23805329 (-) False XLOC_031032
TCONS_00061994 lncRNA upstream 958335 24076625 ~ 24085954 (-) False XLOC_031041
TCONS_00061995 lncRNA upstream 958335 24076625 ~ 24086051 (-) False XLOC_031041
TCONS_00060242 mRNA downstream 164485 22871718 ~ 22952156 (-) False XLOC_031007
TCONS_00060243 mRNA downstream 234431 22873814 ~ 22882210 (-) True XLOC_031007
TCONS_00060241 mRNA downstream 247991 22851857 ~ 22868650 (-) True XLOC_031006
TCONS_00060240 mRNA downstream 495224 22609826 ~ 22621417 (-) True XLOC_031005
TCONS_00060238 mRNA downstream 496762 22605530 ~ 22619879 (-) False XLOC_031005
TCONS_00060251 mRNA upstream 58203 23176493 ~ 23179319 (-) False XLOC_031010
TCONS_00060252 mRNA upstream 58654 23176944 ~ 23179335 (-) True XLOC_031010
TCONS_00060253 mRNA upstream 77777 23196067 ~ 23200880 (-) True XLOC_031011
TCONS_00060255 mRNA upstream 149831 23268121 ~ 23277385 (-) False XLOC_031013
TCONS_00060256 mRNA upstream 149831 23268121 ~ 23277939 (-) False XLOC_031013
TCONS_00060226 other downstream 678046 22437311 ~ 22438595 (-) True XLOC_030997
TCONS_00060225 other downstream 678658 22435786 ~ 22437983 (-) False XLOC_030997
TCONS_00060223 other downstream 882136 22234407 ~ 22234505 (-) True XLOC_030995
TCONS_00060221 other downstream 1019733 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060212 other downstream 1164507 21943382 ~ 21952134 (-) False XLOC_030988
TCONS_00060254 other upstream 104411 23222701 ~ 23222819 (-) True XLOC_031012
TCONS_00060260 other upstream 212863 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060280 other upstream 585167 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060284 other upstream 639643 23757933 ~ 23758587 (-) True XLOC_031029
TCONS_00060285 other upstream 650087 23768377 ~ 23770557 (-) True XLOC_031030

Expression Profile

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