RNA id: TCONS_00060220


Basic Information

Item Value
RNA id TCONS_00060220
length 627
lncRNA type retained_intron
GC content 0.35
exon number 2
gene id XLOC_030992
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 22073710 ~ 22082918 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATTGTCTTTCTTATGAGAGGAATATCCGCTACAATCGTCTCTTCTTTTCTTATTCCAACACACGTCTTACCCTTTCTTAGTCCACCATGGCGGACGAGCAAGAGATAATGTGCAAGCTAGAAAACATCAAAGAAATAAGGAATAAGACAATTCAGATGGAGAAGATCAAATCTAGACTGAGGACCGAGTTTGAAGCTCTGGAGTCAGAAGAAAAGCACCTGAGAGAGTACAAACAGGAAATGGATCTTCTGCTGCAAGAGAAAATGGCTCACGTAGAGGAGCTGCGGCTCATTCATGCGGATATTAACGTGGTAAACAGATCATCTGTGATACAAGATTTGATTTGAACTCcatttataatttctttattgTTTATTCATCACATCTGCTCTTTCTGACTTAATGCATATACATGAATGCATGCAACATATATTATGAGATAATTGGTTAATCTTAGTTACATATTTTGTAATAACTTATATTTGTAATAAATCACTTTTCTATCACACCTAATATACAGAAAGACAACTCACTATGACTTGATGCATGTcatgtatatataataaacataaaaaacattacaCTCAGCATAATTCtctgcataattgagtacaccccattttgaa

Function

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0007528 neuromuscular junction development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048665 neuron fate specification biological_process
GO:0048666 neuron development biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-030131-2207 Predicted to enable metal ion binding activity. Involved in neuromuscular junction development; positive regulation of neuron differentiation; and spinal cord motor neuron differentiation. Acts upstream of or within neuron development and neuron fate specification. Located in nucleus. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Miles-Carpenter syndrome. Orthologous to human ZC4H2 (zinc finger C4H2-type containing).

Ensembl:

ensembl_id ENSDART00000147484

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060218 lncRNA downstream 35961 22040277 ~ 22045634 (-) True XLOC_030991
TCONS_00060217 lncRNA downstream 39739 22040277 ~ 22041856 (-) False XLOC_030991
TCONS_00061988 lncRNA downstream 147317 21926822 ~ 21934278 (-) True XLOC_030987
TCONS_00061987 lncRNA downstream 148102 21926822 ~ 21933493 (-) False XLOC_030987
TCONS_00060209 lncRNA downstream 201368 21868178 ~ 21880227 (-) True XLOC_030986
TCONS_00061989 lncRNA upstream 147883 22230690 ~ 22235052 (-) False XLOC_030995
TCONS_00061990 lncRNA upstream 149352 22232159 ~ 22235158 (-) False XLOC_030995
TCONS_00061991 lncRNA upstream 371023 22453830 ~ 22455994 (-) True XLOC_030998
TCONS_00061992 lncRNA upstream 372759 22455566 ~ 22457289 (-) True XLOC_030999
TCONS_00061530 lncRNA upstream 423638 22506445 ~ 22510064 (-) True XLOC_031001
TCONS_00060216 mRNA downstream 28743 22027588 ~ 22052852 (-) False XLOC_030991
TCONS_00060215 mRNA downstream 54238 22021142 ~ 22027357 (-) True XLOC_030990
TCONS_00060214 mRNA downstream 62534 22011575 ~ 22019061 (-) True XLOC_030989
TCONS_00060210 mRNA downstream 80542 21939733 ~ 22001053 (-) False XLOC_030988
TCONS_00060222 mRNA upstream 32443 22115250 ~ 22130937 (-) True XLOC_030994
TCONS_00060224 mRNA upstream 280208 22363015 ~ 22369916 (-) True XLOC_030996
TCONS_00060227 mRNA upstream 382279 22465086 ~ 22501663 (-) True XLOC_031000
TCONS_00060228 mRNA upstream 432540 22515347 ~ 22544151 (-) True XLOC_031002
TCONS_00060229 mRNA upstream 467807 22550614 ~ 22573624 (-) False XLOC_031003
TCONS_00060212 other downstream 129461 21943382 ~ 21952134 (-) False XLOC_030988
TCONS_00060206 other downstream 344250 21736359 ~ 21737345 (-) True XLOC_030985
TCONS_00060202 other downstream 788350 21293130 ~ 21293245 (-) True XLOC_030982
TCONS_00060189 other downstream 1635922 20444226 ~ 20445673 (-) False XLOC_030970
TCONS_00060221 other upstream 4849 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060223 other upstream 151600 22234407 ~ 22234505 (-) True XLOC_030995
TCONS_00060225 other upstream 352979 22435786 ~ 22437983 (-) False XLOC_030997
TCONS_00060226 other upstream 354504 22437311 ~ 22438595 (-) True XLOC_030997
TCONS_00060254 other upstream 1139894 23222701 ~ 23222819 (-) True XLOC_031012

Expression Profile

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