RNA id: TCONS_00061987


Basic Information

Item Value
RNA id TCONS_00061987
length 1413
lncRNA type read_through
GC content 0.39
exon number 3
gene id XLOC_030987
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 21926822 ~ 21934278 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACGCAACAGCAATGTGACGTTCGAGTCTCATACATCAGTTGTGAAAAACAGCTGTTGCTTTCAGggaattatttcaaaataaaggtACCAATGAGTGCACATGTTAAGAAGTCTTTAAGGTTTTGACTGACGGACATCCTTCCACTCCATCTTGGTGCTTTGTAAAGCCTGGGTCTTCTTCTCATCTACCTTCACATAGTCCACCCTGTATTCGTCTGCCAGCAATGGTTTCTGAAAGCATCAACAATACAAACATGAATAAGCATGACTAACCGTTATCAAAACTGCAGGCAGATTTTGCGCCGTGTCATGTTTATAGCTGAGCGATGATGATAAAGCCACCAAAACAGGAAATACTGAGTCAATGAAGATTCATGATGGGCACCAGAAAGGATCATTTTGGCAGATAGCACTAAAacgcaacacacaaacacacactaaatgAATGTTTGTAATGGAGTCCTTTTTGACCAAGTCTACCACTGACCTTCTGGACAGGTGACGGAGAGGCAGAGTTGAAGTCAAGTGACAAGTAATCCAGCTGAGAAGGCCTCATCCAGGGAGCAGAGTCACAAGATGGAAACAACATCTGCCGAGAGTCCTGGACAAAGGAAAACGCATGTGCCTGACCTGAAAGAACCCTGTTCCTGCTCTCAAGACACAAAGCTGCTGTCTGTGGTTCCTGCTCTGTGTCTCTGACCCGACCGTGCTCTTCCTCTCATGCTTTTGTCTAGctagcttaaagggatagttcatccaaaaataacaatttactCACTctgtactcaccctcaagtggttcctaacctttatgagtttctttcttttgctgaacacaaaagccattttaaagaaagctgaaaacctgacaTCCGTAGTAGGACAAACAAATGGtaaaaagtcaatggctacatgcttccaacattattcaaaagatcttcttttgtgtttaacagaagaaagaaactcttaaaggtttgaaatgcgtaaatggtgagtaaataatgagagttttcatgtttgggtgaactatccctttaaatgatcaGTTTCAAAGTAATGTAAGAATTTCACACATACTGTTTACAGTTGTGACCAACACACACAAGCAGGCTACACCCTGTTTGAACATTAAGATGCTTATCTATTTCTCACAGTAATATAATTGTAAAGcagggtgtctgtggggtcttaaaaattattaaaagttgacAAATCAATTATGAGTAAATTAAGGctcttaaaagttattaaaaagtcttaattttgtttttacgaggtcttaaattttgttcaagttttTTCCAAAGTGTTTcactccaaaataaaaatgtttgacttcacaaatataattattttactcctaatattaacaatggcACGCTCGATCCATGCAATTGGTTCGGTCCGG

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060209 lncRNA downstream 46595 21868178 ~ 21880227 (-) True XLOC_030986
TCONS_00060208 lncRNA downstream 66479 21859698 ~ 21860343 (-) False XLOC_030986
TCONS_00061983 lncRNA downstream 74607 21756657 ~ 21852215 (-) False XLOC_030984
TCONS_00060217 lncRNA upstream 106784 22040277 ~ 22041856 (-) False XLOC_030991
TCONS_00060218 lncRNA upstream 106784 22040277 ~ 22045634 (-) True XLOC_030991
TCONS_00060220 lncRNA upstream 148102 22081595 ~ 22082807 (-) True XLOC_030992
TCONS_00061989 lncRNA upstream 297197 22230690 ~ 22235052 (-) False XLOC_030995
TCONS_00061990 lncRNA upstream 298666 22232159 ~ 22235158 (-) False XLOC_030995
TCONS_00060207 mRNA downstream 38454 21852714 ~ 21888368 (-) False XLOC_030986
TCONS_00060205 mRNA downstream 402571 21296567 ~ 21524251 (-) False XLOC_030983
TCONS_00060204 mRNA downstream 402571 21296567 ~ 21524251 (-) True XLOC_030983
TCONS_00060203 mRNA downstream 504432 21295747 ~ 21422390 (-) False XLOC_030983
TCONS_00060201 mRNA downstream 861728 21059459 ~ 21065094 (-) True XLOC_030980
TCONS_00060210 mRNA upstream 6240 21939733 ~ 22001053 (-) False XLOC_030988
TCONS_00060211 mRNA upstream 7433 21940926 ~ 21970881 (-) False XLOC_030988
TCONS_00060213 mRNA upstream 18388 21951881 ~ 22001003 (-) True XLOC_030988
TCONS_00060214 mRNA upstream 78082 22011575 ~ 22019061 (-) True XLOC_030989
TCONS_00060215 mRNA upstream 87649 22021142 ~ 22027357 (-) True XLOC_030990
TCONS_00060206 other downstream 189477 21736359 ~ 21737345 (-) True XLOC_030985
TCONS_00060202 other downstream 633577 21293130 ~ 21293245 (-) True XLOC_030982
TCONS_00060189 other downstream 1481149 20444226 ~ 20445673 (-) False XLOC_030970
TCONS_00060188 other downstream 1481149 20444226 ~ 20445673 (-) True XLOC_030970
TCONS_00060186 other downstream 1517870 20408836 ~ 20408952 (-) True XLOC_030968
TCONS_00060212 other upstream 9889 21943382 ~ 21952134 (-) False XLOC_030988
TCONS_00060221 other upstream 154163 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060223 other upstream 300914 22234407 ~ 22234505 (-) True XLOC_030995
TCONS_00060225 other upstream 502293 22435786 ~ 22437983 (-) False XLOC_030997
TCONS_00060226 other upstream 503818 22437311 ~ 22438595 (-) True XLOC_030997

Expression Profile

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