RNA id: TCONS_00071428


Basic Information

Item Value
RNA id TCONS_00071428
length 430
RNA type processed_transcript
GC content 0.41
exon number 2
gene id XLOC_036564
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 32784492 ~ 32794476 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TgtcaattaaacattttatttcttcaTGTCTTTCAATGACTGTTGAGTAGGAAGACAGTGATGCAAATGCCCAATGCATGACTTGCTATATTTGTTTCTGGCAGACTGGCATGAAGCACATGGGGACAGAGGGGAAGTACACAACTCACCAGTGAGAAGTCATGATCAGGTATTTGCATTGCATGTAAAGGAGACATAAGGAGgtcaataaagaaaataaatgagagaacgttcgagAATAGTTCAACAAGCAGATTGAGATCTGTAAGTTTGTCAATGTCAGACAGAGAGAACATGCGAGTTGTGTCCTAATATGCTGTGTTGCTGGTTGGAAAGGGAGGAGGTGTTGGTAGGCACCTTCAGATAGCTATTTCTGTAATGGGAACTCAACAAGGGTCAGTCTAGATGAACAAGCAGGTATATGCTTGTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000134968

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071421 lncRNA downstream 314051 32472628 ~ 32473799 (-) True XLOC_036561
TCONS_00071420 lncRNA downstream 324128 32461512 ~ 32463722 (-) True XLOC_036560
TCONS_00071419 lncRNA downstream 324848 32460395 ~ 32463002 (-) False XLOC_036560
TCONS_00072483 lncRNA downstream 326753 32460562 ~ 32461097 (-) False XLOC_036560
TCONS_00071418 lncRNA downstream 330258 32456407 ~ 32457592 (-) True XLOC_036559
TCONS_00072485 lncRNA upstream 108934 32903410 ~ 32907299 (-) True XLOC_036567
TCONS_00071438 lncRNA upstream 482949 33277425 ~ 33278592 (-) True XLOC_036571
TCONS_00072486 lncRNA upstream 588286 33382762 ~ 33386564 (-) False XLOC_036572
TCONS_00071439 lncRNA upstream 588286 33382762 ~ 33402110 (-) True XLOC_036572
TCONS_00071441 lncRNA upstream 799174 33593650 ~ 33615673 (-) True XLOC_036574
TCONS_00071427 mRNA downstream 281281 32501405 ~ 32506569 (-) True XLOC_036563
TCONS_00071424 mRNA downstream 290035 32482733 ~ 32497815 (-) False XLOC_036562
TCONS_00071423 mRNA downstream 290269 32481577 ~ 32497581 (-) False XLOC_036562
TCONS_00071422 mRNA downstream 290269 32481577 ~ 32497581 (-) False XLOC_036562
TCONS_00071425 mRNA downstream 296418 32482745 ~ 32491432 (-) False XLOC_036562
TCONS_00071429 mRNA upstream 7342 32801818 ~ 32803227 (-) False XLOC_036565
TCONS_00071430 mRNA upstream 7359 32801835 ~ 32805214 (-) True XLOC_036565
TCONS_00071431 mRNA upstream 56765 32851241 ~ 32878228 (-) False XLOC_036566
TCONS_00071432 mRNA upstream 81933 32876409 ~ 32894203 (-) True XLOC_036566
TCONS_00071433 mRNA upstream 120150 32914626 ~ 33114202 (-) True XLOC_036568
TCONS_00071398 other downstream 1086820 31692259 ~ 31701030 (-) True XLOC_036549
TCONS_00071393 other downstream 1383902 31395824 ~ 31403948 (-) True XLOC_036545
TCONS_00071379 other downstream 1745972 31040166 ~ 31041878 (-) True XLOC_036540
TCONS_00071377 other downstream 1787822 30999914 ~ 31000028 (-) True XLOC_036539
TCONS_00071362 other downstream 2620146 30167630 ~ 30167704 (-) True XLOC_036531
TCONS_00071434 other upstream 137167 32931643 ~ 32931759 (-) True XLOC_036569
TCONS_00071444 other upstream 988962 33783438 ~ 33783554 (-) True XLOC_036576
TCONS_00071450 other upstream 1111901 33906377 ~ 33910067 (-) False XLOC_036577
TCONS_00071451 other upstream 1111901 33906377 ~ 33912981 (-) False XLOC_036577
TCONS_00071452 other upstream 1111901 33906377 ~ 33918577 (-) False XLOC_036577

Expression Profile

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