XLOC_036549 (fbxo4)


Basic Information

Item Value
gene id XLOC_036549
gene name fbxo4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 31646031 ~ 31701157 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071397
GACAGTTCCGGGAAAATAAAACGGCATTAGTTTGCTCAAATGAAATTGTATCAAATAGTTGACTgaaacataaagaaattaagcAAATGAGTCCGCGTTGTTGCTCTTTTCAGAAGGTAGGCTACATAAAGAAGTGTCATCAGTATGTTGAGCCGATCTATAGTCGTGCAAAGTCTCAGGAGTATCAGAGATAGATTTTTTGATACAAGAAGACACAGAAATGAGCAAAGTGATGGGCCAAGTGATGATGCCATGGGAGCCTCTCTGGATAATTTGTCGGTTGACATGCAGTTCCTCATCATGACCTTCCTGTCTCCGCAAGACCTCTGCAGACTGGGAGGCACCAGCACATACTGGCGGTCAATGGTTCGAGACCCTGTCCTGTGGAAGTACTTCCTGCTGCGTGATCTGCCACTCTGGCAGTCAGTTGACCATTTATCATTGCCTCGGGTCAAGCTCAATAGCTCAGCTGTGCTAGAGGACTCTGAGATGCACTTTGATTATATGGCAGAGTATCTACGTGTCTGCCCAGCTTGTCGAAACCAATGGCGTCATCAGCCCAGGGCAGCGTTTGAGTCTGTGGCTTCCTTCTTCCAGTCTTTTGTTCCTGTTGCAGAGCCGCAGTTCGCCATTTTCGGCCCTGGGCTTGAGCAGTTAGAGGTTTCACTAATGAATGTGATGATGAATTCTCCTGAAATTCTGCCTATAGCAGGAATACCTCAACGACAGATTGATGGTATTGGATCTGGAATCAGTTTTAAGTACAAAGATCAGCACAGATTCAATATTGCAACATTATATTCAAATAACAGGATGGAGCGAGAGAGAGCTCGTCTAGAGCAACTCAGTCTGCGCAGTAAAATCTTCATCTATGAAGAGGACAGTGAGTCCAACATACCCGCAAGCCTCAACCCTATGTTTAATCAAGTGTGCCAAGCTGTGAATGGATTCATCTTTGTTGCCAATGCTGAGACAGAAAGAGGAATGGACAAAAGCTGGGAGGAGGAAATTGCACAAATCAGAGTCATGTTAGACCCTGCAGTGGGCACTGCATCCCGTCCTGTCCTGATACTCTCCTGCGTGTCTAGAGAAACACCAGATAGACAGAGGATTCATTGTGTGACTATCGCCCATCAGCTTCAGCTAAGCTCACTTGTCAACCCCTGGATGGTTCTAGACACGACTGCAGAAACACTGACAGGACTGCTGGATGGCATTGATTGGCTG
>TCONS_00071398
AAAGAAGTGTCATCAGTATGTTGAGCCGATCTATAGTCGTGCAAAGTCTCAGGAGTATCAGAGATAGATTTTTTGATACAAGAAGACACAGAAATGAGCAAAGTGATGGGCCAAGTGATGATGCCATGGGAGCCTCTCTGGATAATTTGTCGACCTCTGCAGACTGGGAGGCACCAGCACATACTGGCGGTCAATGGTTCGAGACCCTGTCCTGTGGAAGTACTTCCTGCTGCGTGATCTGCCACTCTGGCAGTCAGTTGACCATTTATCATTGCCTCGGGTCAAGCTCAATAGCTCAGCTGTGCTAGAGGACTCTGAGATGCACTTTGATTATATGGCAGAGTATCTACGTGTCTGCCCAGCTTGTCGAAACCAATGGCGTCATCAGCCCAGGGCAGCGTTTGAGTCTGTGGCTTCCTTCTTCCAGTCTTTTGTTCCTGTTGCAGAGCCGCAGTTCGCCATTTTCGGCCCTGGGCTTGAGCAGTTAGAGGTTTCACTAATGAATGTGATGATGAATTCTCCTGAAATTCTGCCTATAGCAGGAATACCTCAACGACAGATTGATGGTATTGGATCTGGAATCAGTTTTAAGTACAAAGATCAGCACAGATTCAATATTGCAACATTATATTCAAATAACAGGATGGAGCGAGAGAGAGCTCGTCTAGAGCAACTCAGTCTGCGCAGTAAAATCTTCATCTATGAAGAGGACAGTGAGTCCAACATACCCGCAAGCCTCAACCCTATGTTTAATCAAGTGTGCCAAGCTGTGAATGGATTCATCTTTGT

Function

symbol description
fbxo4 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and protein polyubiquitination. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in female organism. Orthologous to human FBXO4 (F-box protein 4).

GO:

id name namespace
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-081104-415 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and protein polyubiquitination. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in female organism. Orthologous to human FBXO4 (F-box protein 4).

Ensembl:

ensembl_id ENSDARG00000074170

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071397 False 1227 mRNA 0.46 7 31646031 31701157
TCONS_00071398 True 789 nonsense_mediated_decay 0.46 5 31692259 31701030

Neighbor

gene id symbol gene type direction distance location
XLOC_036548 ghra coding downstream 39517 31465222 ~ 31606514 (-)
XLOC_036547 NA coding downstream 213619 31428135 ~ 31432412 (-)
XLOC_036546 znf131 coding downstream 228892 31406731 ~ 31417139 (-)
XLOC_036545 nim1k coding downstream 242083 31387563 ~ 31403948 (-)
XLOC_036544 creb3l3l coding downstream 261411 31375119 ~ 31384620 (-)
XLOC_036550 C8H5orf51 coding upstream 3467 31704624 ~ 31716302 (-)
XLOC_036551 rgs7bpa coding upstream 200161 31901318 ~ 31919624 (-)
XLOC_036552 RNF180 coding upstream 222701 31923858 ~ 31938364 (-)
XLOC_036553 ipo11 coding upstream 327210 32028367 ~ 32354721 (-)
XLOC_036554 lipg coding upstream 675779 32376936 ~ 32386042 (-)
XLOC_036539 BX640472.1 non-coding downstream 646003 30999914 ~ 31000028 (-)
XLOC_036536 NA non-coding downstream 724759 30919949 ~ 30921272 (-)
XLOC_036531 NA non-coding downstream 1478327 30167630 ~ 30167704 (-)
XLOC_036530 dre-mir-27b non-coding downstream 1478506 30167435 ~ 30167525 (-)
XLOC_036555 BX545917.5 non-coding upstream 726422 32427579 ~ 32431477 (-)
XLOC_036556 BX545917.6 non-coding upstream 734581 32435738 ~ 32446891 (-)
XLOC_036557 BX545917.2 non-coding upstream 750799 32451956 ~ 32453546 (-)
XLOC_036558 BX545917.7 non-coding upstream 752495 32453652 ~ 32456337 (-)
XLOC_036559 BX545917.4 non-coding upstream 755250 32456407 ~ 32457592 (-)

Expression


Co-expression Network