XLOC_036551 (rgs7bpa)


Basic Information

Item Value
gene id XLOC_036551
gene name rgs7bpa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 31901318 ~ 31919624 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071400
ATCTACTCTCAATAAACGCCGCACAGAGTTGAGCGTTCACACTTGCGCCGCATATTAGTCCATTTTTGGGAGCAAAGATTCTCGCGGCGGGGTGTTTGGTTTTTTTTAAGCAGCAGCTATTCTTTCTTTGTTGAAGGACTGTACGGGGCATCAAGACATGTTTGCATCTGGTTCTTTGTTATCGCATTTCTCTCTGCTGAATAAGACGAAGCCCTGCAAGGACACTTCGGCTGTCTGCTGGAGTGAATGAAGGTGACTCGGCTTCTGCGTCGCGGCAATGCGGAGAGAATCCAGGAGCAGATCGATCAATTGAGTAAGACGTTTAGCAAACCGGCGGCAGTATATTGATCAATCAGCATTTTATATCAGGGCAGTTTCTTCACTTGATGTGTATGCATGAGTTCTGCACCGAATGGGCGCAAAAACCGCCCCAGAACTGCCGGGACCATTTTCCAGATCGGCGGTAAAGCCCCGTCCAGAGAGTCGGAGCGCCGGGAGAGCAGCGAAGCTCTGCTTGCCGTCTCGGACTGCAGAATGGTTGTCCAGGAGTTCAATACACTTGTGGCCCTCTATAGGGAGTTGGTTATCTCTATTGGAGAGATTTCCGCTGATTGTCCTTCTCTTCGGGCGGAAATGCACAAGACACGCACAAAAGGCTGTGAGATGGCACGAACAGCACATCAGAACCTTTCTGCAATATCAGGCCCAGAAGATGGAGAAATCCATCCGGAGATCTGCCGCCTCTTCATCCAGCTGCAGTGCTGTCTGGAGATGTACCTGACGGAGATGCTgaaatctgtgtgtctgctggggTCCCTGCAGCTACACAGGAAAGGAAAACATTACTTAGGAGCTACAAAGTTGGACAGTAGGAAGGAGGACAGTTCTGACATTCCGATCCTGGAAGACACGTCCTCCACTCCACCGGACTGTCCGCACACGTACTTCCTGGTGGCCACAGACATTGAGAACATCGAGAGGGACAtgacagaaatgaaaaatctGCTAAGCAAACTCAGGGAGACAATGCCTTTACCGCTGAAGAACCAAGATGACAGCAGTTTGTTGAATCTGGCGCCATACCCCATGGTCCGGCAGAGAAAGCGGCGGTTCTTCGGTCTCTGTTGTCTGGTGTCCAGttaagatctctctctctctctcccacaatTCAGTCACGAATGACTGCGATTTATCACAATGTGTGACACTCACCAATCAACAGTACTACTGCCATTTCCCAAACCAGTGCTTTCTTTTGGTGAGTTCTGTCCAGTTTCTTACAGCAATCAACATTAATACCTGTAATATCTGTGTAATcagtagtcatgcaaacactctATAATATTTGATCGATATGACCGAGTTTCATTTTGAAATGAATGTTCATCTACATTATGCTTAGTAAAGGTTTGTAGTATGAATACTGCTATGTTCGTACATCATTCATATGCTGTGCTTTTTTTGTCAAGACAGGTGTTGTATTGAGGCGTCCGAGAGTGCTAAATAGAGCAAAAGATTCTGATGCTAAACCTTTATAATGcttatcattttttaaacactGCACAACACCATCGAATGCGGTAACTGTTGATTCTTtggataaaattttatttatatacatattctTTGGCTGTTACCATATTTTTACAAGGGTATTATTTAGTCTTCCATAAACCGAAAATCCTGTAACTCTTTATTTTTGTTCCTTTTGTTTCAGCCTTTAGGAGTATACAATACCTGAAGAAGCCTTTGTAAATAAGAATATATCTATAAATGGACATTTTAGAGATGTACATATACAATGTAAACCTAGCGCTCTGAATTATTTTTCGAAACTGTGATTCCTTTAAAGAGATTGTCAGTAAAGGGTGGCATGTCTATCCATCTGGTGTGATATAAGTCCAGATTGGAGGGGCTCAGCATGGGTCTTGCTTATTAATAACAGTTCTAAATGTGTCAGGCATGGTGAAGATACTGTAGTGTTCATGAAAAGGCGCAGTGTCGTTTTACATTGGtaataaacctttttttaatgatttaa
>TCONS_00071401
aaaaaaatgacagatttATTATAGCATTTATAAACTGCACCtctctgatgatttgaagtgcttaCTGTATTCTTACCTGCAATATAAGCCACTTTGAATAAATGAGTtaattgaataaatgtaaatttgctATAAGTTATGTCCTAATAGCATAAAAATGGATACTACTTGTAAAGTAAGGCATAAATGTTAAAACTGCTTGCCATTGAACGCTAATCCTTTATACCAAATATTGATAAAATGGCATGAGCATCTGTCGCCTGAGGCTCTGCTCCCCAGCAAATAGCCTGTTTTACCTTTGTGAAACTGTCTGGATGTTTCAATGTTAAGAATGAAAAATGTCTAGGCAACTTGGATGCATGTCATCTCCTCAAAGTTAAAAACCTCTTTAATTTATCGGCTTGATACATTTTCAAGGTTAAAATAGATTTGTTCAGCCTGTACTTTCTTAGCTTGTTTGCCTTTGTTTTCCTCTCTTCCAAAAGGTTGTCCAGGAGTTCAATACACTTGTGGCCCTCTATAGGGAGTTGGTTATCTCTATTGGAGAGATTTCCGCTGATTGTCCTTCTCTTCGGGCGGAAATGCACAAGACACGCACAAAAGGCTGTGAGATGGCACGAACAGCACATCAGAACCTTTCTGCAATATCAGGCCCAGAAGATGGAGAAATCCATCCGGAGATCTGCCGCCTCTTCATCCAGCTGCAGTGCTGTCTGGAGATGTACCTGACGGAGATGCTgaaatctgtgtgtctgctggggTCCCTGCAGCTACACAGGAAAGGAAAACATTACTTAGGAGCTACAAAGTTGGACAGTAGGAAGGAGGACAGTTCTGA

Function

symbol description
rgs7bpa Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within negative regulation of signal transduction. Predicted to be located in cytoplasm and plasma membrane. Predicted to be active in neuron projection; nucleus; and postsynapse. Orthologous to human RGS7BP (regulator of G protein signaling 7 binding protein).

GO:

id name namespace
GO:0009968 negative regulation of signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-380 Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within negative regulation of signal transduction. Predicted to be located in cytoplasm and plasma membrane. Predicted to be active in neuron projection; nucleus; and postsynapse. Orthologous to human RGS7BP (regulator of G protein signaling 7 binding protein).

Ensembl:

ensembl_id ENSDARG00000060601

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071400 False 2041 mRNA 0.44 6 31901318 31919624
TCONS_00071401 True 838 lncRNA 0.40 3 31906971 31915055

Neighbor

gene id symbol gene type direction distance location
XLOC_036550 C8H5orf51 coding downstream 185016 31704624 ~ 31716302 (-)
XLOC_036549 fbxo4 coding downstream 200161 31646031 ~ 31701157 (-)
XLOC_036548 ghra coding downstream 294804 31465222 ~ 31606514 (-)
XLOC_036547 NA coding downstream 468906 31428135 ~ 31432412 (-)
XLOC_036546 znf131 coding downstream 484179 31406731 ~ 31417139 (-)
XLOC_036552 RNF180 coding upstream 4234 31923858 ~ 31938364 (-)
XLOC_036553 ipo11 coding upstream 108743 32028367 ~ 32354721 (-)
XLOC_036554 lipg coding upstream 457312 32376936 ~ 32386042 (-)
XLOC_036555 BX545917.5 coding upstream 507955 32427579 ~ 32431477 (-)
XLOC_036556 BX545917.6 coding upstream 516114 32435738 ~ 32446891 (-)
XLOC_036539 BX640472.1 non-coding downstream 901290 30999914 ~ 31000028 (-)
XLOC_036536 NA non-coding downstream 980046 30919949 ~ 30921272 (-)
XLOC_036531 NA non-coding downstream 1733614 30167630 ~ 30167704 (-)
XLOC_036530 dre-mir-27b non-coding downstream 1733793 30167435 ~ 30167525 (-)
XLOC_036557 BX545917.2 non-coding upstream 532332 32451956 ~ 32453546 (-)
XLOC_036558 BX545917.7 non-coding upstream 534028 32453652 ~ 32456337 (-)
XLOC_036559 BX545917.4 non-coding upstream 536783 32456407 ~ 32457592 (-)

Expression


Co-expression Network