XLOC_036554 (lipg)


Basic Information

Item Value
gene id XLOC_036554
gene name lipg
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 32376936 ~ 32386042 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071408
aaactatttaaaactctAATGAGCAACCTGATACAGGTTCACACACTTTCCTAGCACCTCTCGTGAAGGATTAACACGCTACACTTCCTTGGTCATTTCACTTTGGCAAAAGAATAAAGAAACCGTTTTAAAGCCCTGAACATTATGGTAGAAAAATCATTGAAAATTGCACTTTGCTTCTTATGTGTTATCCTGTGCCATTCATTCAGTGCCTTTGCAGCTGCACCAGACGAGAGCGCGCCTTTAAATGAAGATGCAGAGAATTTCTTCCCAACAGATTCAGCGGTACTTCATGACAAAATCAGCTACAACATGCGGAAGTCCTTGGATCTCGATGACGGAGCATGTTACCTTCAACCGGGGAAAAAGGAAAGCATTGTGGCGTGTGGGTTCAATGCTACACTTAGAACAATTCTAATCATCCACGGTTGGACGATGAGTGGGATGTTTGAGAGCTGGATGCACAAACTGGTGGCTGCTGTTCAGAGACGAGAGTCCGAGGCCAATGTGGTGGTGGTGGATTGGCTGGGCCTTGCTAACCAGCTTTACCCTGATGCCGTCAACCACACTCGTCGGGTTGGGCAAAGCATAGCTACACTTTTGGACTGGCTCCAGgaagAAGAGCAGCTCCAGCTCGAGAATGTGCACATAATCGGATACAGTCTTGGGGCTCACGTTGCTGGATATGCTGGGACTTTTGTAAATGGAATTATTGGCCGTATAACAGGTTTAGACCCAGCTGGCCCCATGTTTGAGGGAGCAGATTCCTACAATAAACTCTCTCCTGACGATGCAGATTTTGTCGACGtcctgcacacatacacacgtggAGCTTTGGGTGTCAGTATTGGGATCCAGGAGCCAATTGGCCACATTGACATCTATCCCAATGGTGGCGACGTTCAGCCTGGCTGCACTTTTGGAGAGTTTCTGTCCGCTGCTTCTGGAAATTTCATGGAAGCCATGAAGTGCGAACATGAGAGGGCTGTTCATCTTTTTGTGGATTCCCTCATGAACAAAGACCATGTGAGCTATGCTTTTCAATGTACCGGCCCTGATCGCTTTAAGAAGGGCATTTGTCTGAGCTGCCGGAAGAACCGCTGCAACAGCATTGGATACAATGCCAAGAAAATGCGTAAGCGGAGAAACAGCAAGATGTACCTGAAAACTCGTGCTGACACGCCTTTTGGTGGTTACCACTATCAGATGAAGATGCATGTGTTCGACAGGAAGAACGCAGAGAATGCAGATCCCACTTTCTATGTCAAACTTTATGGATCTTATAATGATAGCAGTAATCTCATTGTTGATGTTACCGAAGGAATTGGTTTAAACCTCACAAACACGTTTCTGGTCTTTACTGAAGAGGACATCGGTGAGTTGCTCAAAATCTCACTTCGCTGGGAAGGACCTTCTGATTCTTGGACATCCGCGATAAAACACTTGGGGTCCTCGTTCTTTTCATGGTCGAGTGCAGCAAGCCAAAAGATTCTAGAGGTTCGGAGGATCAGAGTCAAAGCAGGAGAAACGCAAAAGAAGTTCACTTTCTGTGCTGAAGAGACTGAGATCTCGCCAGGAGAAGAGATTATGTTTGTTAAATGCCGGGACGGCTGGGAAGTAAAACCCAGGAAACGATTGCACTACTGAGAGAAAGCACTGTTACCCCGGGACTCATGACGGTGCAGGGCCTGAGCACTTTTTTGTTTTGGTACACGTTTGGTGGAAATGCaccatggttttttttttttttttgggtggatAGAAGTCAACTCATGCTGCTCAAATGTCCAGCTCTGATGGGTGATGGATGGTTACTGGACTTGCTCAGGGCATTGTTTTTTCTACCATTGAACTGTTCTGGATTGATTGAGATTACATATTTTGTCTTTTGATACTGTTTGTACATTTTCCGTTGTCAGAAACTGTTTGCGGATCGCCGACTCCTCCTTAACAAcatgtttgttatatatttttgtacGTTTTTAATTTATGAAGGAAAGCACTGTTAAACCTAGCTTATTTATCAATCTAATACACACCTTGTACCAAGGCATAAATTAATTCTCTCCCATGTTACCTGCCGACCACTTTTACATGTCTGTCTGTGGATTTCAATAGGAAGAAGGATTTTATATGAATTCACAGTATTATTTAAGGTCGGAAGAATGGAGAGCTGTTCTGTCTTCATAGAATTGTTGTACATTTTGTGTCTtatgttttatgtaaataatgtgtatataaaactgataaatttgtaataaaattattGTAGGTTGA
>TCONS_00071409
AAGACTCTGGACTTAACTTGGACTTGTCTGACTGGGCTCTGGATTTGACTAGGATCCTAAATGCAAAGACCAGAGACTTGCTTCTCTTGCAGAACTATGACTTGGTCCCAGCTCTGGTTTTCACAGCGTTTTGCTGTGTTCTCAGAGCTTCACATGGTTCCAGTTGAATTCCTGAAGTCACGTGGTGTGTTTTACACTGGTCCTTTTTCTAAGCATTCAAACTCTCTGGACTGTTGCTCACTGTGGAGGATAAGAGAGCCCTTAAAATGTCTTTGGTTTTGAACAATCAGAGGTTTGGAACTGTCATGATTCACCCTCATGTAatgttaatttttaggtgaactaatccttttGCAACCTTCTATATAgggtattttgaaaatgaatgtaacTTCAGCAAgattaaaactgttttgttttattcacagTACCGAAGGAATTGGTTTAAACCTCACAAACACGTTTCTGGTCTTTACTGAAGAGGACATCGGTGAGTTGCTCAAAATCTCACTTCGCTGGGAAGGACCTTCTGATTCTTGGACATCCGCGATAAAACACTTGGGGTCCTCGTTCTTTTCATGGTCGAGTGCAGCAAGCCAAAAGATTCTAGAGGTTCGGAGGATCAGAGTCAAAGCAGGAGAAACGCAAAAGAAGTTCACTTTCTGTGCTGAAGAGACTGAGATCTCGCCAGGAGAAGAGATTATGTTTGTTAAATGCCGGGACGGCTGGGAAGTAAAACCCAGGAAACGATTGCACTACTGAGAGAAAGCACTGTTACCCCGGGACTCATGACGGTGCAGGGCCTGAGCACTTTTTTGTTTTGGTACACGTTTGGTGGAAATGCaccatggttttttttttttttttgggtggatAGAAGTCAACTCATGCTGCTCAAATGTCCAGCTCTGATGGGTGATGGATGGTTACTGGACTTGCTCAGGGCATTGTTTTTTCTACCATTGAACTGTTCTGGATTGATTGAGATTACATATTTTGTCTTTTGATACTGTTTGTACATTTTCCGTTGTCAGAAACTGTTTGCGGATCGCCGACTCCTCCTTAACAAcatgtttgt
>TCONS_00071410
GCACCTCTCGTGAAGGATTAACACGCTACACTTCCTTGGTCATTTCACTTTGGCAAAAGAATAAAGAAACCGTTTTAAAGCCCTGAACATTATGGTAGAAAAATCATTGAAAATTGCACTTTGCTTCTTATGTGTTATCCTGTGCCATTCATTCAGTGCCTTTGCAGCTGCACCAGACGAGAGCGCGCCTTTAAATGAAGATGCAGAGAATTTCTTCCCAACAGATTCAGCGGTACTTCATGACAAAATCAGCTACAACATGCGGAAGTCCTTGGATCTCGATGACGGAGCATGTTACCTTCAACCGGGGAAAAAGGAAAGCATTGTGGCGTGTGGGTTCAATGCTACACTTAGAACAATTCTAATCATCCACGGTTGGACGATGAGTGGGATGTTTGAGAGCTGGATGCACAAACTGGTGGCTGCTGTTCAGAGACGAGAGTCCGAGGCCAATGTGGTGGTGGTGGATTGGCTGGGCCTTGCTAACCAGCTTTACCCTGATGCCGTCAACCACACTCGTCGGGTTGGGCAAAGCATAGCTACACTTTTGGACTGGCTCCAGgaagAAGAGCAGCTCCAGCTCGAGAATGTGCACATAATCGGATACAGTCTTGGGGCTCACGTTGCTGGATATGCTGGGACTTTTGTAAATGGAATTATTGGCCGTATAACAGATTTTGTCGACGtcctgcacacatacacacgtggAGCTTTGGGTGTCAGTATTGGGATCCAGGAGCCAATTGGCCACATTGACATCTATCCCAATGGTGGCGACGTTCAGCCTGGCTGCACTTTTGGAGAGTTTCTGTCCGCTGCTTCTGGAA
>TCONS_00071411
AGGTTCACACACTTTCCTAGCACCTCTCGTGAAGGATTAACACGCTACACTTCCTTGGTCATTTCACTTTGGCAAAAGAATAAAGAAACCGTTTTAAAGCCCTGAACATTATGGTAGAAAAATCATTGAAAATTGCACTTTGCTTCTTATGTGTTATCCTGTGCCATTCATTCAGTGCCTTTGCAGCTGCACCAGACGAGAGCGCGCCTTTAAATGAAGATGCAGAGAATTTCTTCCCAACAGATTCAGCGGTACTTCATGACAAAATCAGCTACAACATGCGGAAGTCCTTGGATCTCGATGACGGAGCATGTTACCTTCAACCGGGGAAAAAGGAAAGCATTGTGGCGTGTGGGTTCAATGCTACACTTAGAACAATTCTAATCATCCACGGTTGGACGGTGAGATTTTAAGAAAAATCATGTgcccaattattatttttttcattattttggctcatcctttaatataatgtagttAGACATACTGTATGATGATGTTCAATTccaatta

Function

symbol description
lipg Predicted to enable lipoprotein lipase activity and phospholipase activity. Predicted to be involved in fatty acid biosynthetic process and triglyceride catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in myotome; nervous system; neural tube; and notochord. Human ortholog(s) of this gene implicated in cardiovascular system disease; cerebral infarction; coronary artery disease; and myocardial infarction. Orthologous to human LIPG (lipase G, endothelial type).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006633 fatty acid biosynthetic process biological_process
GO:0019433 triglyceride catabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004465 lipoprotein lipase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0004620 phospholipase activity molecular_function
GO:0016298 lipase activity molecular_function

KEGG:

id description
ko00561 Glycerolipid metabolism
ko04979 Cholesterol metabolism

ZFIN:

id description
ZDB-GENE-040426-699 Predicted to enable lipoprotein lipase activity and phospholipase activity. Predicted to be involved in fatty acid biosynthetic process and triglyceride catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in myotome; nervous system; neural tube; and notochord. Human ortholog(s) of this gene implicated in cardiovascular system disease; cerebral infarction; coronary artery disease; and myocardial infarction. Orthologous to human LIPG (lipase G, endothelial type).

Ensembl:

ensembl_id ENSDARG00000031044

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071408 False 2277 mRNA 0.43 10 32376936 32386042
TCONS_00071409 False 1078 lncRNA 0.43 3 32377250 32379821
TCONS_00071410 False 827 mRNA 0.48 5 32381132 32385989
TCONS_00071411 True 513 lncRNA 0.40 2 32383874 32386008

Neighbor

gene id symbol gene type direction distance location
XLOC_036553 ipo11 coding downstream 22215 32028367 ~ 32354721 (-)
XLOC_036552 RNF180 coding downstream 438572 31923858 ~ 31938364 (-)
XLOC_036551 rgs7bpa coding downstream 457312 31901318 ~ 31919624 (-)
XLOC_036550 C8H5orf51 coding downstream 660634 31704624 ~ 31716302 (-)
XLOC_036549 fbxo4 coding downstream 675779 31646031 ~ 31701157 (-)
XLOC_036555 BX545917.5 coding upstream 41537 32427579 ~ 32431477 (-)
XLOC_036556 BX545917.6 coding upstream 49696 32435738 ~ 32446891 (-)
XLOC_036557 BX545917.2 coding upstream 65914 32451956 ~ 32453546 (-)
XLOC_036558 BX545917.7 coding upstream 67610 32453652 ~ 32456337 (-)
XLOC_036559 BX545917.4 coding upstream 70365 32456407 ~ 32457592 (-)
XLOC_036547 NA non-coding downstream 944524 31428135 ~ 31432412 (-)
XLOC_036539 BX640472.1 non-coding downstream 1376908 30999914 ~ 31000028 (-)
XLOC_036536 NA non-coding downstream 1455664 30919949 ~ 30921272 (-)
XLOC_036531 NA non-coding downstream 2209232 30167630 ~ 30167704 (-)
XLOC_036530 dre-mir-27b non-coding downstream 2209411 30167435 ~ 30167525 (-)

Expression


Co-expression Network