RNA id: TCONS_00072895


Basic Information

Item Value
RNA id TCONS_00072895
length 982
lncRNA type retained_intron
GC content 0.37
exon number 2
gene id XLOC_037036
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 17438765 ~ 17449872 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAAGAGCTCAGACACGGACACGGTGTGAATTTAACAAGGAAAAGCAGAAGGAGTTTTATATTATATCGGATATTTCCTAATTGGACACTAACGGAGTATAGAAATGAAGTCTCCAAAGATGAAGTCACAGAGCAAATCATTTCTCGAGGATGATGACGACCTCAACGCCGTATTGTGTGAATTCGACGCTGTCATTGAGGATTTCACGTCCCCCGTGGAGAAGAGACACTTCAGATACGACGAGCATTTGAAAACTATGAAGAGACGGAGCAGCGCGAGCGTCAGTGACAGCGGCATCAGCGACTCTGAGAGTAAGTGATTAATTATGCAGACAAAAGTAGAGTCTGTGTTAGCTATTTTTGCAGAATGGCTGATAGAAGTGCACGTGCTCGTGTCTTGAGGTCATTGTCTTCGCGTCAAGACTAAGCTCTGCAGCCTCAGGAGTTACAGTGCATAATCTTATCTATCTAAGATAATCTGAGCCCACACACACAAGAACAAAGGACACGTTTCGTTAAATGTCTTTTGAAAGACCTTGAAACTTAAAGacttattatatttagtttttaatgattatttgttataattaaaaatacaataatgatTTATTGTAAATACTGGTGTTTTTGAAACCATTTTTTTGATGAACTATGCCTAGTTAACTGTAGTTAACCGATAAACTCAGCTTCTACTACAGTAATCTGTGGTATATTTTAGTGTAACATACCACATAGTTGTAGAAAATTACAGATGATTTgtttaaattactatagttgttgtattaccatTTACCAAGGTTAAATCAAGTACTTAACTATATGGTTCAAAAAACagtatagtattttttcatgtggggtCAGTCAGCAAATATTGGTCTATTCATTGTCCTGGCAGATATTCTGTCATTAGTTTGTCTTGTAATAGCTGTTAGGGGGTACTAGTTCATGTTTATACTGTCAATCCTAAAATTGGAGATTGTCC

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-31 Predicted to act upstream of or within regulation of cell cycle. Is expressed in several structures, including anterior neural keel; nervous system; neural plate; neural tube; and presumptive diencephalon. Orthologous to human RGCC (regulator of cell cycle).

Ensembl:

ensembl_id ENSDART00000140852

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074889 lncRNA upstream 95231 17337151 ~ 17343544 (+) True XLOC_037032
TCONS_00072890 lncRNA upstream 104252 17331502 ~ 17334523 (+) True XLOC_037031
TCONS_00072887 lncRNA upstream 127094 17309058 ~ 17311681 (+) False XLOC_037031
TCONS_00075079 lncRNA upstream 211481 17226244 ~ 17227294 (+) True XLOC_037030
TCONS_00074888 lncRNA upstream 662160 16775987 ~ 16776615 (+) True XLOC_037028
TCONS_00074890 lncRNA downstream 196221 17636381 ~ 17636674 (+) True XLOC_037037
TCONS_00072907 lncRNA downstream 775805 18215965 ~ 18248542 (+) True XLOC_037043
TCONS_00072918 lncRNA downstream 1471537 18911697 ~ 18914987 (+) False XLOC_037050
TCONS_00075080 lncRNA downstream 1471566 18911726 ~ 18914987 (+) True XLOC_037050
TCONS_00072922 lncRNA downstream 1654933 19095093 ~ 19101825 (+) False XLOC_037052
TCONS_00072893 mRNA upstream 4618 17429170 ~ 17434157 (+) True XLOC_037035
TCONS_00072892 mRNA upstream 12908 17423941 ~ 17425867 (+) True XLOC_037034
TCONS_00072891 mRNA upstream 52319 17348745 ~ 17386456 (+) True XLOC_037033
TCONS_00072886 mRNA upstream 104117 17306162 ~ 17334658 (+) False XLOC_037031
TCONS_00072888 mRNA upstream 104119 17309195 ~ 17334656 (+) False XLOC_037031
TCONS_00072897 mRNA downstream 347704 17787864 ~ 17952217 (+) False XLOC_037039
TCONS_00072898 mRNA downstream 422698 17862858 ~ 17960341 (+) True XLOC_037039
TCONS_00072899 mRNA downstream 531775 17971935 ~ 18006632 (+) False XLOC_037040
TCONS_00072900 mRNA downstream 542577 17982737 ~ 18001771 (+) False XLOC_037040
TCONS_00072901 mRNA downstream 543303 17983463 ~ 17998474 (+) False XLOC_037040
TCONS_00072889 other upstream 111269 17317167 ~ 17327506 (+) False XLOC_037031
TCONS_00072882 other upstream 1452978 15982344 ~ 15985797 (+) True XLOC_037025
TCONS_00072881 other upstream 1530955 15907033 ~ 15907820 (+) True XLOC_037024
TCONS_00072875 other upstream 1867768 15567364 ~ 15571007 (+) False XLOC_037020
TCONS_00072872 other upstream 3291622 14143073 ~ 14147153 (+) True XLOC_037015
TCONS_00072896 other downstream 222790 17662950 ~ 17663065 (+) True XLOC_037038
TCONS_00072903 other downstream 548306 17988466 ~ 17998476 (+) True XLOC_037040
TCONS_00072905 other downstream 723469 18163629 ~ 18164027 (+) True XLOC_037042
TCONS_00072908 other downstream 876243 18316403 ~ 18316520 (+) True XLOC_037044
TCONS_00072909 other downstream 910207 18350367 ~ 18350483 (+) True XLOC_037045

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU330759 True 7684 lncRNA 0.35 3 CI01000080 4184256 ~ 4192362 (+)