RNA id: TU318086


Basic Information

Item Value
RNA id TU318086
length 2357
lncRNA type inter_gene
GC content 0.48
exon number 6
gene id G234238
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 12200076 ~ 12270069 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCACAATTCAAACCCTAAATTGTTCCAGGTTTTACCGTATTTGCAGTTAAATAGCGTTGAATAAAGAATTTACCATTTGTCAGGTTTTGTGGAACTCAGTTAGCAAtgtttatttctgttatttttatgaATATGTTCAGTTCATATAAAGCCAGAATAAAAAGTAATACAGGGAAGGTTGCAGAGTGTACATTAGAACTTGGCTGCACTCTCTCTATCCACAGCACCGATTCCCGGTGAAGAGTGTTCACCTGTGGCCTTGCGTCTAGCAGAGCCGTGAAGCAGAGCGGGCCTAGGATGTCTGGCTGCTGATTTGGCTACACTCTTTCGAGATGGAGAACGACATTGGAGGGCTGAAACCTTATTCAGGTCAGCCCTCCTCACAGCTACAGcaaagaggagagacaggatTATACCAATATGCAAACCTCAGTTAAATGTACTGCAGAGAGGCAAATCTGTACTTAACAAGTTACACAAGTGACATTGCTATTGGATTCGCTAGGGAATAAAATGTGTAAatgaaaagatatataacaattTGTTCTAAGCTAAACAACACTTCGTGAATACAGAATCGgaaccttttttcttcttcatctcctCTCTTGGTGGATGGTGGCCAGTTACTTTGCGGGACACTTTACTCTCAGTGATGCCAGGGTGGCCCCTTCCTCTGCCAGGGGCCCGTTTAGCGGGTCTGTCCACCACAGGTGTACTAGTAGGACGCTGGACCTGAGGAAGGGCTTCAATTTGCTCAGTCATGATACTTTTGTCATCATCTTGTGAGTCCATCCAGCCACTGTCTGTATCTAGGATAGAGACGTCCATGGTGGTTTCATCATTAGCTGCCTGACTGGTCTGGTGCAGTACATCAGAGGTCTCTTCCACCTCGTGTTCACCcatcctctcctccccctcatCCTCCATCGTTTTCTTCGGTTTCTCTTCACGTACCACATCAGAACCAACTTCTTCCACTTGCTCCTCTCCTGTTGGGTCTTTCTCTACCACCTCTTTAGTCCCTTCATCCCTATttatttgtgtatgttttaCTTTATCCTCACCTATCCCATCATCTCTGCCACCTTCATCCAGTTGCTGTGGGAGGTCATGGTCGGAGCATAGAGGCAAGTGCGAACTGTCTGTCACAGGCTCCCCATTATCACTGCTTTGCACACTGTGACTACATTCTTCTGCTCCAGACTTGGGATATTCTTCTACCATCTGATCGCCTACCGTCAGCCTCCCCCTAATTAGACTCTCAGGGACTTCAGCTTCTTCAATTACCTCTTGAGGCTCTTCGGCAATCTCAATTTCATCCTCTTCATCTGCTTCTTCCTCTACTTGTGCTTGAGGTATAATGATGACTGGGGAGGATATTTGTGGCATTTTTGGAGCAACCTTATCCAGAGTCACCTCCTGTAACTGGATTTTGGCATCTTTCTCATCTAAGGGCTTTCCGGTGCTTAAATCCTGAACATCTTCTGGGGTCTCTTGCTTTTCTATTCTTTCTAATCTTGTAGGTATCCCATTCTCACTTTCAATTTTCTTGTCATCTTTTTCTTGGATGTACGCTGGAAAAGTTTATTCTGAAATGAACAGAGTGACGATAAACAAAACCTTTTCAGGGAAGTGGGAGACTTTTGGCTGTCTATCCACGACCGTTCTCCAGCACCTTTGGCACTGCTGGGCCAGTGATGGCGTGACTGAATGAGGTGGCGGTGGGAGGTGAGGGATCTACCCTCACTTGATGAGCGGTCACCCCTTCTCCCCCGTTCCTCACCCCATTGCGGCAAGTGGAGACGCGCCCCCGGGTGGAGTAGAGGCCATGCGATGTGCGGTCTACAATGGAGAGTTGATGGTGGTGTCCCGAGAGAGGAGGGTTTTTGGGACGAAATGgaaaggaaaacaaaataaacaacaagaTGGGTTTGCTTCAACATCCCTTGTACATAGTCCTTGTCTTTCCTTGGTTGGTCTTTGGTACAGTGTAGATGTTTAGAACACTGTCAGGCTGTCTGTAGGCGAGCTACAGTTTCTTCAGCACTCCTACTGCTGGCCTCTTACACAGACATGATGTGCTTGACGAAACCTCATAGTGGATGCTGCCGTTCTCGTCCTCCTGGCCGGTCATAAGGGCCTCAATCTCTGGCTCAGACATCTTCTCTCCCAGGGTGGACAGCACGATACGCAGCTCAGCGCCCATGACTGTGCCGTTGCCCTCTTTGTCGAAGACGCGGAGACCCTCAACGTAGTCGTCGTAGCTACCCTTTGGCGCGCCGTCAACCTGCTTCAGCATGGGCAGGAAAGCCTCGAAGTTGATCCTCTTGTTGGCCATggagacagagagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318026 lncRNA downstream 377574 11798563 ~ 11822502 (-) True G234194
TU318011 lncRNA downstream 514909 11684622 ~ 11685167 (-) True G234181
XR_005638325.1 lncRNA downstream 578723 11620869 ~ 11621353 (-) True LOC120554169
XR_005638326.1 lncRNA downstream 579220 11619834 ~ 11620856 (-) True LOC120554171
TU317991 lncRNA downstream 673774 11524445 ~ 11526302 (-) False igfbp5a
TU318106 lncRNA upstream 8450 12278519 ~ 12284697 (-) False G234253
TU318107 lncRNA upstream 11442 12281511 ~ 12284697 (-) True G234253
TU318193 lncRNA upstream 88694 12358763 ~ 12361269 (-) True G234311
XR_005638300.1 lncRNA upstream 132920 12402989 ~ 12424938 (-) True LOC120554060
TU318222 lncRNA upstream 162778 12432847 ~ 12434743 (-) True G234328
XM_039792858.1 mRNA downstream 350253 11839717 ~ 11849823 (-) True LOC120554168
XM_039792842.1 mRNA downstream 475937 11718181 ~ 11724139 (-) False LOC120554156
XM_039792657.1 mRNA upstream 98327 12368396 ~ 12383014 (-) True obsl1a
XM_039792660.1 mRNA upstream 332175 12602244 ~ 12644357 (-) False LOC120554061
XM_039792658.1 mRNA upstream 332175 12602244 ~ 12644357 (-) True LOC120554061
XM_039792661.1 mRNA upstream 332175 12602244 ~ 12644356 (-) False LOC120554061
XM_039792659.1 mRNA upstream 332175 12602244 ~ 12642973 (-) False LOC120554061
XR_005638322.1 other downstream 758150 11390004 ~ 11441926 (-) False spega
TU317805 other downstream 1153117 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 1230966 10967423 ~ 10969110 (-) True G233954
TU317694 other downstream 1248596 10949523 ~ 10951480 (-) False G233954
TU318109 other upstream 17851 12287920 ~ 12293143 (-) False G234253
TU318311 other upstream 683021 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 715748 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 786547 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1568 other upstream 842089 13112158 ~ 13112228 (-) True trnag-gcc_27

Expression Profile