RNA id: TU318026


Basic Information

Item Value
RNA id TU318026
length 624
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G234194
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 11798563 ~ 11822502 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCTTCTACCATTTATTACACATAATTACATTCTTAAATAAAAACGATTCACCGAACAGTTCCTTGCATAGAGATATTACAAtaccaatttaaaaaaggaattaTGAAACAAACCggtaacaaaaataaatctttcTCATTTTTCCATAATAAAGAACATTATCGTACCCTTACATCATAATATACAAATGATAAATTTGAAACACTTTATACagcaaaagaaaaggagaaagacaACGGAGGAAAAAATGGTGGAGGAAGGGAGCGAGGAAGGGATttggaggggaggagggagtcGGACAGAGGAGAGAAGTTGAAAGGGATCATATCTGAGAAAATGGAAGAGGCAggaggggggggcggggggtggCGATGAGGGAATGCTGGTAGAAAAAGGGGGTTCGTTTGATTTGAAATTCAGACCTAGTGGAAACAGAGGTGGTGTCACACATAGTAATGCGTGTTTCCTCCCTCTGCTGAGAGCAAAAAGCTGCACCTGGATCTCTGACTCGCACAAGGTGGCTTGAAAAACGGCAAAAACACACAAGGAGAacggagatagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318011 lncRNA downstream 113396 11684622 ~ 11685167 (-) True G234181
XR_005638325.1 lncRNA downstream 177210 11620869 ~ 11621353 (-) True LOC120554169
XR_005638326.1 lncRNA downstream 177707 11619834 ~ 11620856 (-) True LOC120554171
TU317991 lncRNA downstream 272261 11524445 ~ 11526302 (-) False igfbp5a
TU317975 lncRNA downstream 309086 11458937 ~ 11489477 (-) False LOC120554153
TU318069 lncRNA upstream 299738 12122240 ~ 12201428 (-) True G234225
TU318086 lncRNA upstream 377574 12200076 ~ 12270069 (-) True G234238
TU318091 lncRNA upstream 388432 12210934 ~ 12212609 (-) True G234240
TU318106 lncRNA upstream 456017 12278519 ~ 12284697 (-) False G234253
TU318107 lncRNA upstream 459009 12281511 ~ 12284697 (-) True G234253
XM_039792842.1 mRNA downstream 74424 11718181 ~ 11724139 (-) False LOC120554156
XM_039792844.1 mRNA downstream 74425 11718181 ~ 11724138 (-) False LOC120554156
XM_039792845.1 mRNA downstream 74571 11718181 ~ 11723992 (-) False LOC120554156
XM_039792843.1 mRNA downstream 74571 11718181 ~ 11723992 (-) True LOC120554156
XM_039792839.1 mRNA downstream 83413 11708327 ~ 11715150 (-) True LOC120554155
XM_039792858.1 mRNA upstream 17215 11839717 ~ 11849823 (-) True LOC120554168
XM_039792657.1 mRNA upstream 545894 12368396 ~ 12383014 (-) True obsl1a
XM_039792660.1 mRNA upstream 779742 12602244 ~ 12644357 (-) False LOC120554061
XM_039792658.1 mRNA upstream 779742 12602244 ~ 12644357 (-) True LOC120554061
XM_039792661.1 mRNA upstream 779742 12602244 ~ 12644356 (-) False LOC120554061
XR_005638322.1 other downstream 356637 11390004 ~ 11441926 (-) False spega
TU317805 other downstream 751604 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 829453 10967423 ~ 10969110 (-) True G233954
TU317694 other downstream 847083 10949523 ~ 10951480 (-) False G233954
TU318109 other upstream 465418 12287920 ~ 12293143 (-) False G234253
TU318311 other upstream 1130588 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 1163315 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 1234114 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1568 other upstream 1289656 13112158 ~ 13112228 (-) True trnag-gcc_27

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003323 True 1750 lncRNA 0.34 2 NC_007112.7 6398199 ~ 6400326 (-)
rainbow trout (Oncorhynchus mykiss) TU1735275 False 707 lncRNA 0.37 1 NC_048582.1 10168026 ~ 10168732 (-)