RNA id: XR_004578623.1


Basic Information

Item Value
RNA id XR_004578623.1
length 594
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id LOC117597859
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12519894 ~ 12533258 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGATTATCAAAAACCTCCCGGAACTCCTGTTTGAACTCTATGAATGTTTGGCGTAATGTCATCTGATCTAACCAGGGGACAGACCAGGTGAATGGTTTTCTGGGATTCTCAATCTATGCAGCATGACAGGGGAGTGAGAGACAAGTTTGAAAACGACTAGGGCTCCTTGAAGTGAGCACACCATCTGCCAGCTTATGTGTGGTTATCCAGGGTGAGCCCAGAACGAAACGGTTTCCAGGTATAATGTGCCTGTGCATGTCTAGAGGGGGATTTTTCACCAGGTAGGTTTTCTGTTCCCCAGTGGGAAAATTTGAGGGAAACAAGTGTAATATTAAGTATTTCAGCTAGTTTTTCATCCATGGAGTTTCCTGCTACCCTGGAGTCCATGAGCTCTGGAAAACAGTTGGATTATGAAAACCACGGTATGTTCTCTTCCAGAATAACAAAGTACTCATCCACAGGACATGAGGGCTTACGGAATGATTTGgAACTTGGGGACCATGGAAGCCCTCTGCTTGTTTGTTCCCTGTTGATGCGAGGGTTTGTTGCCAGGGGTTCCACAAGACTTGTGTAGGAACAGCATGTTCATGCTGG

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155063 lncRNA upstream 291279 12228214 ~ 12228615 (+) False kcnq2a
TU155070 lncRNA upstream 293532 12226152 ~ 12226362 (+) True G131282
TU155067 lncRNA upstream 302680 12217004 ~ 12217214 (+) True G131279
TU154976 lncRNA upstream 525094 11994414 ~ 11994800 (+) False foxp3a
TU154975 lncRNA upstream 526855 11992819 ~ 11993039 (+) False foxp3a
TU155155 lncRNA downstream 70259 12603517 ~ 12604634 (+) False rbm15
TU155458 lncRNA downstream 156909 12690167 ~ 12712485 (+) True G131606
XR_004578634.1 lncRNA downstream 167454 12700712 ~ 12701501 (+) True LOC117597872
TU155457 lncRNA downstream 179367 12712625 ~ 12729522 (+) True G131605
XR_004578530.1 lncRNA downstream 275865 12809123 ~ 12809738 (+) True LOC117597782
XM_026922840.2 mRNA upstream 10228 12478618 ~ 12509666 (+) True kcnc4
XM_026918236.2 mRNA upstream 44144 12450279 ~ 12475750 (+) True ahcyl1
XM_026918254.2 mRNA upstream 44144 12457723 ~ 12475750 (+) False ahcyl1
XM_026918246.2 mRNA upstream 46147 12450275 ~ 12473747 (+) False ahcyl1
XM_034306408.1 mRNA upstream 46147 12457722 ~ 12473747 (+) False ahcyl1
XM_026926809.2 mRNA downstream 53541 12586799 ~ 12597439 (+) True alx3
XM_034306621.1 mRNA downstream 66440 12599698 ~ 12604705 (+) True rbm15
XM_026927728.2 mRNA downstream 113431 12646689 ~ 12649107 (+) True prok1
XM_026921593.1 mRNA downstream 117967 12651225 ~ 12654683 (+) True LOC113531099
XM_026922582.2 mRNA downstream 125770 12659028 ~ 12662145 (+) True LOC113531715
trnad-guc_1 other upstream 137824 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 809349 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 810462 11705655 ~ 11709432 (+) False porcn
TU154757 other upstream 810462 11705655 ~ 11709432 (+) False porcn
TU154760 other upstream 811933 11705655 ~ 11707961 (+) False porcn
trnav-cac_9 other downstream 528678 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 530792 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 836290 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 1171998 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 1788914 14322172 ~ 14323450 (+) True G132595

Expression Profile