RNA id: AMCG00001250


Basic Information

Item Value
RNA id AMCG00001250
length 1887
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00001250
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21181637 ~ 21203572 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTCCATCCTCAAAATGGTCATCCTAGGAAGCTACTGTGAATCCAACAGCTCTATAGGGGAGGTGTGGGTGCAGAACGGCCTGTTGCCCTGCTTCTACTTCACCCTGGTCCCCACCACGCTCCTCACCGTCTCCCTGTTCTTCGGCACCCTCCATTTTGTCTGCTACAGGAAGTATGGCACGACTATGGAGCCCAAATTCGTGCCTCGCTCCAAGCTCTATGTGCTCCAGCTGTGCCTCTCCACGCTGCTCTTGCTGCAGTTTGTCGGGGGGATGGTGTGGCAAGCAGTGGGACCCGGCCTGCTCCCTGGCTACGTGCTGAATTACGGGTGCCTGTCCGTGGTGGGCTGGGGTTGTGCGATGGCTCTGCTGCGGACGGAGAGGAAACGGGTGCTGGTGCGAGACCGGACCAGGGGGCACAGCTCTGTGCTACTGCTTTTCTGGGCTCTGGCGTTTGCTGCGGAAAACCTCAGCTTCATCTCCTGGACAAGCCCCCTCTGGTGGTGGTCCCTGGAGACCATGCATCATAAGGTGCAGTTTGGGCTCTGGCTGCTCCGGTACATTGGCACAGCGCTGCTTTTCATACTGGGCCTGAAGGCTCCAGGGCTGCCACAGAGACCCTACATGCTTCTGATCAACGAGGATGAGAGGGACTTGGAACACGGGCAGGCCCTGTTGGGACAGAATACAGAGAACCAGTCGACCTGGCAGGGCTTTGGGAAGAAGGTGAGGCTGCTAGTGCCATACATGTGGCCCAGTGGCAACTTCATCCTGCAAGGCCTGGTCTTGCTGTGTCTCTGCCTCCTGGGCTTGGAGAGAGCCATCAACGTATTTGTGCCAATCTACTACAAGAACATTGTCAATGAGCTGAGCGACGGCAGCAGCTGGAGGACTCTGGCTATCACTCAGTACACCAACCGGGAAGTGCAGGTGCGACTGTTTGTTCACCTGCACATGCTCTCCCTCCGCTGGCACCTGGGTCGCAAAACCGGAGAGGTCCTTCGCAGCATCGACCGTGGGACCTCATCTATCAACAGCCTCCTCAGCTACATTGTGTTCAGTATCCTCCCGACCATCGCCGACATCGTGATCGCCATCATCTACTTCATCTCCTTCTTCAATGCCTGGTTTGGCCTCATCGTCTTTATCTGCATGTTCCTCTATATCACCCTGACAATCATCATAACAGAGTGGAGGACCAAGTACCGACGAGAGATGAACACCCAGGATAATGCCGCTAAATCCAAGGCTGTGGACTCGCTGCTCAACTTCGAGACGGTGAAGTACTACAATGCTGAGAATTATGAAGTGAACCGGTTTAATGATGCTATTCTGAAGTATCAgGTTTCTGAATGGAAAGTAAACGCTTCCTTGGCACTGTTGAACCAAGCACAGAACCTCATCATTGGAGGGGGGCTTCTGGCTGGCTCCCTGCTCTGTGCCTACTTTGTCACAGAAAACAAGtttcagGTTGGAGATTATGTTCTTTTTGGCACCTATATAATTCAACTTTACACTCCCCTCAATTGGTTTGGCACCTACTATAGGATGATCCAGACCTCTTTCATAGACATGGAGAACATGTTTCATTTATTCACTGAAGAACAAGAAGTTAAAGATGATGTAAACGCTGTGAATCTCCTTTTTAAGCTGGGGAAGGtggaatttgaaaatgtttacttcagCTATGTGGGTCCTTCTGGATCAGGCAAGAGCACCATCATACGTCTCCTTTTCCGCTTCTATGATATCCAAGGAGGCTGCATCCGGATTGATGGCCAGGACATTTCCAAGGTAGGGGGGCAGGTGATGGGGTGGCActgcaagaggaaaataaaaaaaggtctgAATTTCATCAAGGCCCAAGATGTCTTTGAAGTTGGTTGA

Function

GO: NA

KEGG:

id description
K05661 ABCB6; ATP-binding cassette, subfamily B (MDR/TAP), member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162700 lncRNA upstream 584885 20596431 ~ 20596752 (+) True G129756
TU162668 lncRNA upstream 685292 20464363 ~ 20496345 (+) True AMCG00001229
TU162663 lncRNA upstream 875780 20305643 ~ 20305857 (+) True G129719
TU162651 lncRNA upstream 1086570 19995027 ~ 20095067 (+) True G129708
TU162636 lncRNA upstream 1399775 19781647 ~ 19781862 (+) True G129696
TU162870 lncRNA downstream 37765 21241337 ~ 21241568 (+) True G129904
TU162936 lncRNA downstream 205362 21408934 ~ 21409691 (+) True G129961
TU162949 lncRNA downstream 252447 21456019 ~ 21456860 (+) True G129972
TU162961 lncRNA downstream 337891 21541463 ~ 21541672 (+) True G129984
TU162964 lncRNA downstream 347858 21551430 ~ 21554095 (+) True G129985
AMCG00001248 mRNA upstream 62689 21115275 ~ 21118948 (+) True AMCG00001248
AMCG00001243 mRNA upstream 186175 20968716 ~ 20995462 (+) True AMCG00001243
AMCG00001241 mRNA upstream 258923 20906371 ~ 20922714 (+) False AMCG00001241
AMCG00001239 mRNA upstream 309994 20858612 ~ 20871643 (+) True AMCG00001239
AMCG00001238 mRNA upstream 325293 20847770 ~ 20856344 (+) True AMCG00001238
AMCG00001249 mRNA downstream 21033 21224605 ~ 21226842 (+) True AMCG00001249
AMCG00001252 mRNA downstream 100701 21304273 ~ 21315646 (+) True AMCG00001252
AMCG00001253 mRNA downstream 115898 21319470 ~ 21340288 (+) True AMCG00001253
AMCG00001254 mRNA downstream 140295 21343867 ~ 21353441 (+) True AMCG00001254
AMCG00001260 mRNA downstream 767727 21971299 ~ 21992332 (+) True AMCG00001260
TU162840 other upstream 102767 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 239240 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 256397 20918558 ~ 20925240 (+) True AMCG00001241
TU162705 other upstream 504780 20611272 ~ 20676857 (+) True AMCG00001236
TU162623 other upstream 1692037 19486138 ~ 19489600 (+) True AMCG00001223
TU162879 other downstream 67812 21271384 ~ 21276879 (+) True G129913
TU163362 other downstream 1962691 23166263 ~ 23166656 (+) True G130335
TU163702 other downstream 3230221 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 3380607 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 5653027 26856599 ~ 26863132 (+) False AMCG00001361

Expression Profile