RNA id: AMCG00001299


Basic Information

Item Value
RNA id AMCG00001299
length 1536
RNA type mRNA
GC content 0.57
exon number 14
gene id AMCG00001299
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24180250 ~ 24207621 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCTCTCGGTCCACCCCCAGACACTCCACAGTGGGAGTTATCAGCTACTTCTTGGTCAAAGTCCTGAGACATGGAGCTCAGGTCACAGCCTGCTCCTTGGTGGCTTTGGTGGCAGCGAGGTGCCAGCTGTCACAGGCCAGACAGTTCCCAACACAGACAGGACATGATTTATCAACATCCTACCTCATCTGGGTACAGtgtgttgtgGCACCCAGCAGAcctcctgcagctctgggtCTGAAGGAACAGCTACCtgcagTGGTGGAGGAGTGCAAGTCGAGGCTGCAGGGAGCCGGGTTCACAGAGCTGAAGGAGTCCGACCATTGGGATATCAAGCCTGCCAATAAGtacTTTGTGACCAGGAATTATTCCACTATCATTGCATTTGCTGTAGGAGGGTTGTACAAGCCTGGCAATGGCTTTACCATGATTGGCGCCCACACGGACAGCCCCTGTCTGAGGGTCAAATCGCGCTCCAAGAAGTCCCAGCAGGGCTGCTTGCAAGTAGGGGTGGAGTGCTATGGGGGTGGCATCTGGAATACCTGGTTTGACAGGGACCTCACTGTCGCTGGCAGAGTCATTGTCAAGAAGGGGGACGTTTTGAACCAAAGGCTGGTTCACATCCCTCGGCCCATCCTGAGGATCCCCCACTTGGCCATCCACCTGCAGAGAGACATCAATGACAGCTTTGGCCCCAACAAGGAGAACCACCTTGTACCTATCCTAGCCACAGCTGTCCAGGAGGAACTGGAAACTGGCTCCTGTTCCTCTGGCGATGCCAGCAAAGCCATGACAACAGCTGAGAAACACCAGCCTGCCCTTGTCAACTTGCTTTGCTCCGAGCTTGGGGTGGAGAAGGAAGCCCTGATGGATTTTGAGCTGTGCCTTGCAGACATCCAGCCCGCAGCACTGGGTGGCGCCTTTGAGGAGTTCATCTTCTCCCCTCGCTTGGATAATCtccacagctgtttctgtgccCTGGAGggTCTTATGGAGTCCTGCAGCTCAGCTGAGTCCCTGGACAAAGACACCAATGTCCGTCTGGTGGCACTGTATGACAATGAGGAGGTGGGCTCAGAGAGTGCGCAGGGGGCCATGTCCTTCTTCACCGAGCTCATCCTGCGCCGCCTGTCCTCCAGCACCAACAACCTGACGGCCTTTGAGGAAGCAGTGCCTCGCTCCTGTATGATCAGTGCGGACATGGCCCACGCGGTGCACCCCAACTACCAagaGAAACATGAAGAGAATCACAGACCGTCTTTCCATAAGGGCCCTGTGATCAAGTTTAACAGCAACCAGCGCTATGCCACCACAGCTGTGACGGCCTCCGTGGTCAGAGAGATTGCAGACCGTGTCAGCGTGCCGCTGCAGGATGTCATGGTGAGGAACGACAGCCCCTGTGGCTCCACCATCGGCCCGATTCTCTCTGCCAAGCTGGGCCTGCCTGTGGTGGACCTGGGCAGCCCCCAGTTGGCCATGCACTCCATCCGTGAGATGTGCTGCACTTCAGGCGTCCTGCAGACCACAACGCTCTTT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004177 aminopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01267 DNPEP; aspartyl aminopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163619 lncRNA upstream 59789 24052822 ~ 24120461 (+) True G130552
TU163590 lncRNA upstream 254239 23924878 ~ 23926011 (+) True G130530
TU163591 lncRNA upstream 256373 23923211 ~ 23923877 (+) True G130531
TU163544 lncRNA upstream 324134 23855720 ~ 23856116 (+) True G130492
TU163512 lncRNA upstream 451021 23729005 ~ 23729229 (+) True G130461
TU163703 lncRNA downstream 216944 24424565 ~ 24437017 (+) True AMCG00001312
TU163746 lncRNA downstream 543498 24751119 ~ 24751414 (+) True G130648
TU163787 lncRNA downstream 815058 25022679 ~ 25023049 (+) True G130684
TU163792 lncRNA downstream 849000 25056621 ~ 25056978 (+) True G130689
TU163795 lncRNA downstream 879040 25086661 ~ 25086898 (+) True G130692
AMCG00001297 mRNA upstream 89401 24072429 ~ 24090849 (+) True AMCG00001297
AMCG00001298 mRNA upstream 190168 23948449 ~ 23990082 (+) True AMCG00001298
AMCG00001300 mRNA upstream 266441 23903328 ~ 23913809 (+) True AMCG00001300
AMCG00001294 mRNA upstream 421181 23721823 ~ 23759069 (+) True AMCG00001294
AMCG00001292 mRNA upstream 495129 23565151 ~ 23685121 (+) False AMCG00001292
AMCG00001309 mRNA downstream 49215 24256836 ~ 24286635 (+) True AMCG00001309
AMCG00001302 mRNA downstream 115050 24322671 ~ 24351647 (+) True AMCG00001302
AMCG00001312 mRNA downstream 228869 24436490 ~ 24446233 (+) False AMCG00001312
AMCG00001313 mRNA downstream 240000 24447621 ~ 24455129 (+) True AMCG00001313
AMCG00001311 mRNA downstream 273348 24480969 ~ 24490636 (+) True AMCG00001311
TU163362 other upstream 1013594 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 2903371 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 3101380 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 3237853 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 3255010 20918558 ~ 20925240 (+) True AMCG00001241
TU163702 other downstream 226172 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 376558 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 2648978 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 2744287 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile