AMCG00001294 (ino80d,LOC106582458)


Basic Information

Item Value
gene id AMCG00001294
gene name ino80d,LOC106582458
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 23721823 ~ 23759069 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001294
CTGATGTTCACAAGGACAAGAGTCACGTGATGTATGAAGGCAAACACATACACTTCTCGGAGGTGGACAATAAGCCATTGTGCTCCTATAGCCCCAAGCTCTGCAAGCAGCGCCGACTCAACGGCTACGCCTTCTGTATCCGCCACGTCCTTGAGGACAAGACCGCCCCCTTCAAGCAATGTGAATATGTGGCCAAGTATAACAGCCAGCGCTGCACCAATCCCATTCCCAAATCGGAAGACCGCAGGTACTGCAACAGCCACCTCCAAGTGCTGGGGTTCATCCCGAAGAAAGAGCGCAAGAAGAAGAATGACCCGATGGAGGACATGCGCTCACGGCCTCACCTGGAGTCTGTCGCCCTGAACATCACAGTGCCCTCCCTGGCTCTGAAGACCCCTAACGGGCTGGACgagcctcccctctccccacCCCGCACCCGGTTGCTGGCACCCTTCCCTGATGGCGAGCTGCTGGACCCGTTTGCCTTCCACGAGGATGACACCGATGGGGATGAGGCAGCCCCCCGCAGAGGCTCGGCTGTCAAGAAGAAACTCCAGAGCCGCCTGGTGCTAAACCAGCGGCTGCGgctcagagagactgagatcCTCAAAACCCCCTTAGAGCACTTTAGCCCCTCTCCTGCACCCTGTCCAGCTCTTCAGCAATCGCAGCAACCACAACAGCACCCTTCGCCCCCACCACAGTCCCACCTTCCcccgcagcagcagcaacagcccCTCCCACCCACGCCCCAGCACTCCTACCCACTCCCCCTGCCCTCTGCTTCCCCGCCGTGCCTCCCTGGACTGCCGCAGGGCTTAATATGCAAGCCGCCACCACCTCAGACCGCCATTCTGTCCACCCAGGGGTTAGCTTCCAGCTCCCTGCAGGCTGTGGCCCAGCCACCCGGTCAGTCTCCCAGCAAGAAACCTCTGGGGGGAGGTCTGTtcctccccccctccacactgcctctgcctctgccacCCCTGGCAGGTACTACACCAGCCGACACGCCCAGACCCCACATGATTATCATCAAGCCCAACGTCTTCACTCCTCCACCTGCCTGCCTCACCAGGCTACAAAGGCTTGTCAAATTGTGCTCACATCTCCAGCAGCAAGAAGGGGACCTCTTCCCACATTTAGGAACATCAAGGAGTAACAGGCTGTCTCGGCTCTGCACTTACTTGCAGCAGAAATATAAGCATCTCTGTCGTTTGGAGAGAGCAGCAACTCGGCAAAAGAGATGCCGCCATGCCTTTCGAAAGGCCCTGCTGCATGCTGCCAGCAAGGACCCTGACTGTGCCGGGCAGCTGATCCAGGAGCTCCGCATGGTTGCCCAGACACAGAGCAGCACCAGGACATCAGATTGGCATGACACAGATGCAGGGATCTGCACAGGAAACACTAAGGGCCAGGCGTGCACCAGTCAAGCGCTGCCCTTCACCAGACACTGTTTCCAGCACATTTTGTTGAATCGCTCGCAGCAGCTGTTCTCCAGTTGCACGGCCAAGTTTGCAGACGGTCAGCAGTGTTCCATTCCAGTTTTCGACATCACACACCAGACTCCACTCTGCGAGGAACATGCCAAGAAAATGGACAATTTCCTGCGGGGAGATAGCAACCGCAGAgttcagcaccagcagcagcgCAAGCCCAGGAAGAAGACAAAGCCACCGGCGCTCaccaaaaaacacaagaagaagCGAAGAAGAGGCCCCCGCAGGCCACAGAAACCCATCCCTCCCGCTGTGCCACAGGGGAACCTGGGCATGCCCTCCAGCCTTGCACTGCCACCACAGGCCTCCAGCATCAGGAGCCCATCGACCCCAGACTTAAGTACCGACGAGCTTCCTGATGACATCACCAATGACATCACAGACATTCCAAATGACCTTGAGCTGAATCAGGAGGACTTTTCTGATGTGTTGCCAAGGCTGCCTGATGATCTTCAGGACTTTGATCTGTTTGAAGgtAAAAACGGCGAGCTGCTGCCTACCACAGAGGAGGCTGAGGAGCTGGAGAGGGCCCTGCAGGCCATGACCTCCTACACGGCCTCCCTGGAGTGCCTAAGCTCCATGGGAGAGTTGAGTCAGCCTGACCCCGTGGGTGTGCAAGAGCTCTCGGACCACCGGGCGATGGCGGTTTTCTCTGGTTCTGGTGTGCCTGGTGGTGGCATGGCCTCCCTGGGTCGTGCAGTCGGGAACAGTGAGCTGGGGGATCTGCTGAATGGTCGCATTCCTCCTGAGAACTTCTCTAGCCTGGAGCTGGATGACAACCTGCTTCACTCATCAGGGGCCCAGTTTTCCACACCATCATCTCCCCAGCCGCCACCACGTCCCCACCCCACCTCCGCCACCAGCATCAGCCTTACTTCTGCTGCCCCACCCACGGCATCCACTTCCAATGTGCTACTGAAACATAGCCCCCTGACTGAGCGAACATTCCTCCCGCCCTTCCCTGGGCTCCATGAGGCGGCTGGACAGTCCACCTCACGGACCCAGACCTCTCACCTGTTGGCCAAACCTGAAGAGCTCATCCCACCCCGACAGCAATACACCAGTGAGCACTCGCACTCCTCCACTCACGACGGACACTACAGCAGTGAACACGTGCCATCCCCCTACAGCGACCGCATCACCTCCCCCCATCCCTCTGCCTACCCCTCTGGTGACGGTGGGGGCAGCACATTGGCAGCTAGCTTTCAGCCAGAGCCCCCACTCTTGCCAACACCCATTCTCCAAGGCCAGCTGGAGGTGCCCATCAGCGGGGTGCCAGgcaacccccgccccccctgGAACAACCTACCCCTAGCCTTGGCTGACCCTACCCAGTTTGGCAACCTCATTGGTCCTGAAGGCCATCTGATCTCCACCTCGCTCTCTAcacccccctccacctcccatTCGGTGATTATCCAGCCCACGGCCGCCCTCTCAGCACTGCCCCAGACAAATTTCACCGGCCTGGCCGCTGCAGTGGGCTCCTCGGCCACACCCCCTTCCTCTGCCTCCCCTTCATCTTCTTCTCCGCACGACCTCCTGACCTCGAACCCTCCCAAGCAGCAACTTCCTCAGTTCAGCGCTGCTTTTGGTCACCAACTGGCCTCACACAGCGGAATTCCCAAGGACGTGCAGCCCAGCCACAGCTCCACTGCGCCCCCCACTGGCTTCTCTGTCGCAGGCGCCAGAGCCGCAACTGCCAGCAGCGTGACGCCACCTTTCACCACACATTTTGTTTTAGAGGTCACTGAGTTGCTCTCTATTGTGAATGCTTCTAGTAAGAAAATCTACtcagaaaagaagaaattatacaagaat

Function

symbol description
ino80d Predicted to be involved in DNA recombination and DNA repair. Predicted to be located in nucleoplasm. Predicted to be active in nucleus.

NR:

description
PREDICTED: INO80 complex subunit D-like isoform X1

GO: NA

KEGG:

id description
K11668 INO80D; INO80 complex subunit D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001294 True 3320 mRNA 0.59 9 23721823 23759069

Neighbor

gene id symbol gene type direction distance location
AMCG00001285 NA coding upstream 601868 23100907 ~ 23119955 (+)
AMCG00001284 NA coding upstream 688324 23031304 ~ 23033499 (+)
AMCG00001279 NA coding upstream 968967 22646113 ~ 22752856 (+)
AMCG00001276 NA coding upstream 1114568 22584027 ~ 22607255 (+)
AMCG00001275 ercc3,LOC107706662 coding upstream 1156203 22551140 ~ 22565620 (+)
AMCG00001300 NA coding downstream 144259 23903328 ~ 23913809 (+)
AMCG00001298 NA coding downstream 189380 23948449 ~ 23990082 (+)
AMCG00001297 tmem198a coding downstream 313360 24072429 ~ 24090849 (+)
AMCG00001299 dnpep,LOC106573845 coding downstream 421181 24180250 ~ 24207621 (+)
AMCG00001309 NA coding downstream 497767 24256836 ~ 24286635 (+)
G130365 LOC107575789,LOC100846954 non-coding upstream 440489 23280811 ~ 23281334 (+)
G130348 NA non-coding upstream 497226 23224032 ~ 23224597 (+)
G130346 NA non-coding upstream 504323 23214937 ~ 23217500 (+)
G130166 NA non-coding upstream 916765 22799097 ~ 22805058 (+)
G130160 NA non-coding upstream 1096620 22624958 ~ 22625203 (+)
G130492 NA non-coding downstream 96651 23855720 ~ 23856116 (+)
G130531 NA non-coding downstream 164142 23923211 ~ 23923877 (+)
G130530 NA non-coding downstream 165809 23924878 ~ 23926011 (+)
G130552 NA non-coding downstream 293753 24052822 ~ 24120461 (+)
G130648 NA non-coding downstream 992050 24751119 ~ 24751414 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other upstream 36702 23565151 ~ 23685121 (+)
G130335 NA other upstream 555167 23166263 ~ 23166656 (+)
AMCG00001278 ercc3,LOC107706662 other upstream 1190987 22500035 ~ 22530836 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other upstream 1483169 22189908 ~ 22238654 (+)
AMCG00001260 NA other upstream 1729491 21971299 ~ 21992332 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other downstream 665496 24424565 ~ 24446233 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other downstream 674724 24433793 ~ 24454385 (+)
AMCG00001315 NA other downstream 825110 24584179 ~ 24606472 (+)
AMCG00001331 NA other downstream 1664618 25423687 ~ 25450310 (+)
AMCG00001337 sumo1 other downstream 1976486 25735555 ~ 25749501 (+)

Expression


Co-expression Network