AMCG00001297 (tmem198a)


Basic Information

Item Value
gene id AMCG00001297
gene name tmem198a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24072429 ~ 24090849 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001297
GTACTCCCTTGTGGATGGGAAGTGTGCCCTGATCCCCCTTCCCTCGACGGTACCATGACCTCCACCCTGCAGACGCTGCACTTCAAGCTGCTCCCCCTGGGGGATGGCAGCCCGGAGCGCATCTACAACTGTGACCAGGAGATTGAGAGGCGCTATGAGATCGTCCCCTCTGTGGTGTGCGCCATGTGCTGCCTCTTTGGAATCATCTACTGCTTCTTTGGGTACCGCTGCTTCAAAGCAGTAATGTTCCTGACCGGACTGATGTTCGGCTCCATCATCATCTTCATGCTCTGCTACAAGGAGCGGGTGCTAGACACGCAGCTGAGTGTGGAGGCCAGTGTTGGCATCGGCCTGGGCATCGGGGTGCTGTGTGGCCTGGTCACCATGCTGGTGCGCAGTGTGGGACTCTTCATGGTGGGGCTGCTCCTGGGCCTGCTGGTAGCCGTGGCCACACTGGTGGTGATGGAGCAGTTCTACCACCCTCCCACCGTGTGGATCCCCCTGGGGCTGCTCCTGGGCACCGGGATGCTGTTTGCCGTGCTCACCCTGCAGTGGCAGCGGTGCTTCACCACCCTCTCCACCGCCGTCTTCGGGAGCGCCGTGATCACGGTCACCGTGGACTACTTCATCGAGCTCTTCCTCCTAGTGCGGTATGTCTACGAGCGCATCAAGGTGGCGCCTGCCCAGCCGGTGTGCTGGTTCAGCTGGGTGATCCTGGGGGTGTGGCCTGTGCTGACGCTGCTGGGAGTGCTAGTGCAATGGAAGGTGACGGCTGAGGGCTACTCCCACACTGAAGTCATCATCAGCCGGCAGCAGCGGCGGGTACAGCTGATGAGGATACGGCAGAAGGAAGAGCGCAAGGACcgcaagaagaagaagaagcagcagcagcaacagcaacaccatcaccaccaccaccagcatcCCACCAAGCCCCTACACCCAGAGCCAGCCTATCGCAGGAAACCCAACCCCATCCGCCGCTTTGACGGCGACGTCTTGTCTCCGAGCTACATACAGAGTTTCCGGGACAGGCAGACGGGCTATCCCCAGAGAGGCCTGAGCAGTGGGGCTCACACCATAGTGGACCTGGATTATGACTGTGGTTCCACCGTTCCCCTGACTGCAGCAGCAGGGCCTGCTGTGCGCGTTTAA

Function

symbol description
tmem198a Predicted to be involved in positive regulation of canonical Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic vesicle and plasma membrane. Orthologous to human TMEM198 (transmembrane protein 198).

NR:

description
LOC553226 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001297 True 1155 mRNA 0.61 4 24072429 24090849

Neighbor

gene id symbol gene type direction distance location
AMCG00001298 NA coding upstream 82347 23948449 ~ 23990082 (+)
AMCG00001300 NA coding upstream 158620 23903328 ~ 23913809 (+)
AMCG00001294 ino80d,LOC106582458 coding upstream 313360 23721823 ~ 23759069 (+)
AMCG00001285 NA coding upstream 952474 23100907 ~ 23119955 (+)
AMCG00001284 NA coding upstream 1038930 23031304 ~ 23033499 (+)
AMCG00001299 dnpep,LOC106573845 coding downstream 89401 24180250 ~ 24207621 (+)
AMCG00001309 NA coding downstream 165987 24256836 ~ 24286635 (+)
AMCG00001302 ptprn,ptprnb,LOC107748541 coding downstream 231822 24322671 ~ 24351647 (+)
AMCG00001313 si:ch211-114n24.6,LOC106598125,LOC107581392,LOC107659949,LOC108433351,LOC103467923,LOC102313992,LOC104949664,LOC106573846 coding downstream 356772 24447621 ~ 24455129 (+)
AMCG00001311 tuba8l2,LOC108411703,LOC103042625,LOC107750365 coding downstream 390120 24480969 ~ 24490636 (+)
G130530 NA non-coding upstream 146418 23924878 ~ 23926011 (+)
G130531 NA non-coding upstream 148552 23923211 ~ 23923877 (+)
G130492 NA non-coding upstream 216313 23855720 ~ 23856116 (+)
G130461 NA non-coding upstream 343200 23729005 ~ 23729229 (+)
G130365 LOC107575789,LOC100846954 non-coding upstream 791095 23280811 ~ 23281334 (+)
G130648 NA non-coding downstream 660270 24751119 ~ 24751414 (+)
G130684 NA non-coding downstream 931830 25022679 ~ 25023049 (+)
G130689 NA non-coding downstream 965772 25056621 ~ 25056978 (+)
G130692 NA non-coding downstream 995812 25086661 ~ 25086898 (+)
G130695 NA non-coding downstream 1032745 25123594 ~ 25126079 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other upstream 387308 23565151 ~ 23685121 (+)
G130335 NA other upstream 905773 23166263 ~ 23166656 (+)
AMCG00001278 ercc3,LOC107706662 other upstream 1541593 22500035 ~ 22530836 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other upstream 1833775 22189908 ~ 22238654 (+)
AMCG00001260 NA other upstream 2080097 21971299 ~ 21992332 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other downstream 333716 24424565 ~ 24446233 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other downstream 342944 24433793 ~ 24454385 (+)
AMCG00001315 NA other downstream 493330 24584179 ~ 24606472 (+)
AMCG00001331 NA other downstream 1332838 25423687 ~ 25450310 (+)
AMCG00001337 sumo1 other downstream 1644706 25735555 ~ 25749501 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_01754374_01762948 TMEM198A coding CI01000037 null 1754082 ~ 1763933 (-)