AMCG00001285


Basic Information

Item Value
gene id AMCG00001285
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 23100907 ~ 23119955 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001285
ATGGATTTGAACATTCTTCATCAGATTGACGAGGACCTGGAGTCTAGTGAGGTCTCCTCATTGAAGTTCTTGTGCCTTGATCACATCCCAAAGAAGAAACAGCAGACCATCAAGGATGCCAAAGACTTATTTCTCAGATTGAAAGACAAAGGCCTGATGGATTCTGATGACAGCTTCATCATTGCCGAGCTCCTGTACTTAATAAAGAGGAAGATGCTTTTTGAGCTTTCTGAAGATGTGACTGATGCTGATCTTAAGGATATCAAATTTTTCCTGATTCAAAAACTTCCAAGGTGTAAATTGGAGGATAGCGCAACATTCCTAGATGTTTTAATAGAAATGGAGAAACAGGATATACTGGGAGAAGACAACCTTGAAGTTCTGGAGGAGATCTGTCAAAAAATAAGCAAAGATCTTGAAGAAAATATAGAGGAATTCAAACGTAGCAAAGAAGGTGAGAGTATTGGGGAACCAGCTGACATGGAAGCAGCTTTTGGAGACTCGGGCCCCCCTCGGACCCCACAGtcagAGATGTATGACATGAGTCACAAACCTCGTGGTTACTGCATAATTATCAACAACAAGCACTTCAAACTAGCCAGGCAGAGAGAACCACCAAGAATACTGAAAGACCGGGAAGGAACAGACATTGATGCTGAATCTCTCCAGAAAGTCTTTAAGGAGCTGCACTTTGAAGTGATCCAGCACGATGACCTCAACTCTTCACAGCTCTATGAAGTAATGGGCGTGTACCAGAAGAGGGACCACAGCAACAGAGATGCCTTCATCTGTTGTATCCTCTCCCATGGGGTGAAAGGAGCAGTGGAAGCAGTTGATGGCTGCCCTGTGCCCATTCGCGACCTCACCTCTTTCTTCACCAGCCGAAAATGTCCTTCTCTCATCGGGAAGCCAAAGATTTTTTTCATCCAAGCCTGTCAAGGGTCATTAATGCAGAAGGGGGCAGAGATCCAAGCCGATGGAGAGAACCAGTATACCCAGCAATATGAGACTGATGCTGAGATCATGCAGCCCAACACCATCCCAGATGACTCTGATTTTCTCCTGGGCATGGCAACCGTGGAAGACTACCTGTCCTTCCGAAGCGTATATCAAGGTTCCTTCTACATACAGGCCCTGTGCAGGAACCTGGGCCAGGGCTGCAGGAGGTGA

Function

GO: NA

KEGG:

id description
K04398 CASP8; caspase 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001285 True 1170 mRNA 0.46 6 23100907 23119955

Neighbor

gene id symbol gene type direction distance location
AMCG00001284 NA coding upstream 67408 23031304 ~ 23033499 (+)
AMCG00001279 NA coding upstream 348051 22646113 ~ 22752856 (+)
AMCG00001276 NA coding upstream 493652 22584027 ~ 22607255 (+)
AMCG00001275 ercc3,LOC107706662 coding upstream 535287 22551140 ~ 22565620 (+)
AMCG00001277 ercc3,LOC107660024,LOC107705543,LOC107584836,LOC107677608,LOC107706662 coding upstream 558654 22540350 ~ 22542253 (+)
AMCG00001294 ino80d,LOC106582458 coding downstream 601868 23721823 ~ 23759069 (+)
AMCG00001300 NA coding downstream 783373 23903328 ~ 23913809 (+)
AMCG00001298 NA coding downstream 828494 23948449 ~ 23990082 (+)
AMCG00001297 tmem198a coding downstream 952474 24072429 ~ 24090849 (+)
AMCG00001299 dnpep,LOC106573845 coding downstream 1060295 24180250 ~ 24207621 (+)
G130166 NA non-coding upstream 295849 22799097 ~ 22805058 (+)
G130160 NA non-coding upstream 475704 22624958 ~ 22625203 (+)
G130144 NA non-coding upstream 484750 22615284 ~ 22616157 (+)
G130153 NA non-coding upstream 517943 22582698 ~ 22582964 (+)
G130152 NA non-coding upstream 518286 22582316 ~ 22582621 (+)
G130346 NA non-coding downstream 94982 23214937 ~ 23217500 (+)
G130348 NA non-coding downstream 104077 23224032 ~ 23224597 (+)
G130365 LOC107575789,LOC100846954 non-coding downstream 160856 23280811 ~ 23281334 (+)
G130461 NA non-coding downstream 609050 23729005 ~ 23729229 (+)
G130492 NA non-coding downstream 735765 23855720 ~ 23856116 (+)
AMCG00001278 ercc3,LOC107706662 other upstream 570071 22500035 ~ 22530836 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other upstream 862253 22189908 ~ 22238654 (+)
AMCG00001260 NA other upstream 1108575 21971299 ~ 21992332 (+)
G129913 NA other upstream 1824028 21271384 ~ 21276879 (+)
G129877 NA other upstream 2022037 21077135 ~ 21078870 (+)
G130335 NA other downstream 46308 23166263 ~ 23166656 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other downstream 445196 23565151 ~ 23685121 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other downstream 1304610 24424565 ~ 24446233 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other downstream 1313838 24433793 ~ 24454385 (+)
AMCG00001315 NA other downstream 1464224 24584179 ~ 24606472 (+)

Expression


Co-expression Network