AMCG00001277 (ercc3,LOC107660024,LOC107705543,LOC107584836,LOC107677608,LOC107706662)


Basic Information

Item Value
gene id AMCG00001277
gene name ercc3,LOC107660024,LOC107705543,LOC107584836,LOC107677608,LOC107706662
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 22540350 ~ 22542253 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001277
ATGCTCTCACTTGTAGTTCTGGATGTGGACCCCTTGCAGCTGCAGGTCATCACGAACAGTGGGGCTGCTATCTTTCTTGGGCACCAGGCCTTTGCGCATTGTAGAAGGGAGCACCTCACAGATGAAGACGACGACAAACCTCTCCCAGAAAAACCCATCCCAACTGTCAGGTACTTTGTGGAAAGCGCCTTTCCGGAGGTGATTCAGAGGCTGCTTCAGGACCCCGTGATCAAGGACTGCAGGCTGAGGACTGCAGATGGAGAGGACACAGAACTCATCACCGAGATCATTTCCAGCAAATCAGCAATCTCTAAGTCAAGCCAAGATAGTGGGGGTCCCTCCACCTCTAAGGGCCCAGAGGGAGCCAGTACTGGCACAGACATTCCTGAGGATATCTTTAGCTACTATGAGCAGATGgacaaggaggaggaagaggaggaggagactcAAACTGTGTCCTTTGAGATCAGacaggtaaaaagaaaaaataagcagtTGTTAGTCTCAGCTGACTGCTAG

Function

symbol description
ercc3 Predicted to enable 3'-5' DNA helicase activity. Predicted to be involved in apoptotic process and nucleic acid metabolic process. Predicted to act upstream of or within nucleotide-excision repair. Predicted to be located in nucleus. Predicted to be part of nucleotide-excision repair factor 3 complex; transcription factor TFIIH holo complex; and transcription preinitiation complex. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma; photosensitive trichothiodystrophy 2; trichothiodystrophy; xeroderma pigmentosum; and xeroderma pigmentosum group B. Orthologous to human ERCC3 (ERCC excision repair 3, TFIIH core complex helicase subunit).

NR:

description
PREDICTED: TFIIH basal transcription factor complex helicase XPB subunit

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006265 DNA topological change biological_process
GO:0006283 transcription-coupled nucleotide-excision repair biological_process
GO:0005675 transcription factor TFIIH holo complex cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0043138 3'-5' DNA helicase activity molecular_function
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001277 True 519 mRNA 0.51 4 22540350 22542253

Neighbor

gene id symbol gene type direction distance location
AMCG00001272 NA coding upstream 89460 22384720 ~ 22450890 (+)
AMCG00001271 NA coding upstream 219177 22302530 ~ 22321173 (+)
AMCG00001265 NA coding upstream 371300 22160391 ~ 22169050 (+)
AMCG00001259 NA coding upstream 457109 22051870 ~ 22083241 (+)
AMCG00001254 LOC108266105,LOC107596559,LOC107738101,LOC107752899 coding upstream 1186909 21343867 ~ 21353441 (+)
AMCG00001275 ercc3,LOC107706662 coding downstream 8887 22551140 ~ 22565620 (+)
AMCG00001276 NA coding downstream 41774 22584027 ~ 22607255 (+)
AMCG00001279 NA coding downstream 103860 22646113 ~ 22752856 (+)
AMCG00001284 NA coding downstream 489051 23031304 ~ 23033499 (+)
AMCG00001285 NA coding downstream 558654 23100907 ~ 23119955 (+)
G130125 NA non-coding upstream 213472 22326640 ~ 22326878 (+)
G130090 NA non-coding upstream 335225 22202030 ~ 22205125 (+)
G130014 NA non-coding upstream 589547 21910033 ~ 21950803 (+)
G130010 LOC107575789,LOC100846954 non-coding upstream 673725 21826245 ~ 21866625 (+)
G130008 NA non-coding upstream 715752 21824258 ~ 21824598 (+)
G130152 NA non-coding downstream 40063 22582316 ~ 22582621 (+)
G130153 NA non-coding downstream 40445 22582698 ~ 22582964 (+)
G130144 NA non-coding downstream 73031 22615284 ~ 22616157 (+)
G130160 NA non-coding downstream 82705 22624958 ~ 22625203 (+)
G130166 NA non-coding downstream 256844 22799097 ~ 22805058 (+)
AMCG00001278 ercc3,LOC107706662 other upstream 9514 22500035 ~ 22530836 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other upstream 301696 22189908 ~ 22238654 (+)
AMCG00001260 NA other upstream 548018 21971299 ~ 21992332 (+)
G129913 NA other upstream 1263471 21271384 ~ 21276879 (+)
G129877 NA other upstream 1461480 21077135 ~ 21078870 (+)
G130335 NA other downstream 624010 23166263 ~ 23166656 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other downstream 1022898 23565151 ~ 23685121 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other downstream 1882312 24424565 ~ 24446233 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other downstream 1891540 24433793 ~ 24454385 (+)
AMCG00001315 NA other downstream 2041926 24584179 ~ 24606472 (+)

Expression


Co-expression Network