RNA id: AMCG00014443


Basic Information

Item Value
RNA id AMCG00014443
length 2368
RNA type mRNA
GC content 0.45
exon number 7
gene id AMCG00014443
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 14138406 ~ 14143073 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACGTTTGACGTACATGATTGGCTGTTGCGGGGGTCTAGGGCTTGTCACTCCACACACCGGAAACTCTGAACAATACGAAAAATGGCCGTGGCAGGAAAGTAGTACCAAGTGGTAAATGGGCTGATAATGAAACAATTTTGAAACGTCTGTAAGAGCCTACTTCAAAGAATCAAAATGACGTCCATCATAGAAGTAAGAGCTCCACCCACGGTGTCTTTACGTGGTCCTGGAGATGGCATGGAAACGGACCAGCTGCCTACCTCCCTGGAAGTCACCACTGAGCTTGCCACCAAAATCAGCCCCCCACCACTCAGCCCATGCACAAAACCCACTCCACCACACAACCCTGGGGTCCTCCACCTGGGCAAAGTTAACAAAGATTCCTGCACTGAGCTAGAGGCCATCCGCATTGTGGTCCCCAGAGCGGCCATCTCCCATTATGTGCCCACAAAGGGCTCCAAGCTATTGGACTCTGTGTCAGGTGGAGTGAAAGGGGAGCCCCTGCTGCAGCCCGAAGTTTCAGTGGATCCCAGAAAGGAGGCCCATGACTGGAGGGCTGCTCTGGACAAGCTGCAGAACTCCGAGAGGAGGCTGCTTCAAGACAAGGAGGGCCTCTCCAATCAGCTGCGGGTGCAGACTGAGGTGAACCGGGAGCTGAAGAAGCTGCTGGTGGCGTCTGTGGGGGATGACCTGCAATATCACTTTGAGCGCCTGGCCCGGGAGAAGAACCAGCTCACCCTGGAGAACGAGACGCTGGGCCGCAGCCTGTCCCAGACCACCGAGCAGCTGGAGCGCATGACCATACAGTGTGATGTTTGGAGGAGCAAGTTCCTGGCCAGCAGGGTGATGGCAGAGGAACTCACCAATGCCAGAGTGTCTCTGCAGCGACAGGTGAGGGAAGCCCAGGGTGCCCTCCAGGACCTTCTCTGTGAGAGGGAAGAGTTCTCTCAGGATATGGTGCACACCCACAGGTCTCTGGAGCAGCTCCTGGTCTCTCTGCAGTGGGGCAGACAGCAGACCTATTACCCGAGTGCTCAGCCACTCAGCACTGGAGAACTAGCATCAGCCAATCACAAGTTAGCAAAGGCAATCAATTCTCACCTTTTGGGAAATGTAGGTGCCAGCAGTGCCCAGAAGAGCTCTCCGGCCTCAGAAATTTGTAACACCCCAGCTGAAAAAATGGCAGAAAAGGTGCTGAGAATTCTGGATCCTGTGTCAGTTGCTGAAGATGCTTGTGACCATTCTCTTCCTGAATCGTCACCGACAACCTTTCTCTCCAGCAAGAAGAGCATTGGAAGATTTCATCCATACACCAGATATGAGAACATCACCTTCAACTGTTGTAACCACTGCAGTGGCGAGCTCATTGTGCTTTAAATCCTcatttgtttactgtatttggtttggtttaagGTCATTCATATGTAAAAAGTGCACTATAGTCCATTCAAGTACCCAAAACATGAACTATAGACTCTTTCACCAGCATCCATAAGCGGTTAAGAATTTAACGGATAACCTAAAAGGAGCACAGtgcattaaaacatgtatttatatacttatactTTTTAGAGAATGTATCTATCCGATAACCCCTTTCTGAGGATGGCATCTATTTCTCTGTGTACTTCACCTAAGAAAATAATGGATTTTCAGGTATTTTTTGTTAGTCTTATATCTGGTAAAATGAGCATGTGCTAAGGGCAGGTACAGCTGTGATAAAGTACTGAGAAAACACGTGCTCTGTTCAAACCTTGCCAGTTTTTAGCTGAGATCATGTTTAAGTTGTAAGGATTATGGAAGAAAAATTGGATTGTTAACTGGATAGTGTGACTGATATCAGAACATTTCTCAATGCTTTCAAGTCTGTGATAGTGGCCCAACTATCAATATGtcttaaatacacattttaaagggtTGAATATGTATTACTTCTGCAAAGAGGAGGGTGATGGGGCCATTAATCCCAGAAAGTTCTATTTTCATATAGTATATGAACTTTGAGAATCTAGTATTCAAATTCCTCTGTTACAATGTTTCAAGTGCAATAAATGGACAGAATTGAGTATAGGTGCTAACTGCAATATATAACGCAGCTCGTGGCTGACTGGTTTGAGGAGGTGGAGTCTAATGTGTACTCCAAACGATGTTTTGAAAACGTATTACTGTGTAAAtggtacaataaaatatttatttataaaaaaaaattagtttgtatttatagtGTATGTGTAAAAGTTTTAAGCCACATAATTTGACATTATTCTTGGATTATAGATGTTACACAGAAGGGATGTTAATTAAACGTGTTGATAATGTCAACTAAATCCATACATTACTGGCATAATAGGACTGGAGGACtagtg

Function

GO:

id name namespace
GO:0016043 cellular component organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87518 lncRNA upstream 441535 13694815 ~ 13696871 (+) True G70054
TU87516 lncRNA upstream 453914 13683043 ~ 13684492 (+) False AMCG00014423
TU87409 lncRNA upstream 758002 13377534 ~ 13380404 (+) True G69961
TU87408 lncRNA upstream 758813 13352333 ~ 13379593 (+) False G69961
TU87406 lncRNA upstream 803221 13334214 ~ 13335185 (+) True G69959
TU87727 lncRNA downstream 24373 14167446 ~ 14171012 (+) True G70221
TU87766 lncRNA downstream 50706 14193779 ~ 14194433 (+) False AMCG00014456
TU87767 lncRNA downstream 54907 14197980 ~ 14199308 (+) False AMCG00014456
TU87784 lncRNA downstream 323631 14466704 ~ 14467744 (+) True G70271
TU87814 lncRNA downstream 1036772 15179845 ~ 15180820 (+) True G70286
AMCG00014444 mRNA upstream 32912 14085512 ~ 14105494 (+) True AMCG00014444
AMCG00014442 mRNA upstream 173283 13944780 ~ 13965123 (+) True AMCG00014442
AMCG00014441 mRNA upstream 199301 13930882 ~ 13939105 (+) True AMCG00014441
AMCG00014440 mRNA upstream 217076 13905849 ~ 13921330 (+) True AMCG00014440
AMCG00014439 mRNA upstream 234751 13882719 ~ 13903655 (+) True AMCG00014439
AMCG00014445 mRNA downstream 8226 14151299 ~ 14157726 (+) True AMCG00014445
AMCG00014446 mRNA downstream 17563 14160636 ~ 14160842 (+) True AMCG00014446
AMCG00014447 mRNA downstream 19052 14162125 ~ 14163322 (+) True AMCG00014447
AMCG00014456 mRNA downstream 46491 14189564 ~ 14205014 (+) True AMCG00014456
AMCG00014458 mRNA downstream 80443 14223516 ~ 14235412 (+) True AMCG00014458
TU86705 other upstream 4129758 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6721812 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6788939 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9486442 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 193785 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 1532558 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1532558 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 1986452 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2322608 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile