RNA id: TU87767


Basic Information

Item Value
RNA id TU87767
length 244
lncRNA type sense_over
GC content 0.42
exon number 2
gene id AMCG00014456
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 14189564 ~ 14205014 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAATCTTTACCAAAGCTGAACGGTACAATTATGTGGATCCTGAGTTTGCCTATACTGAAGAAgaggaaaagcaaagaaaagcaCATAAAGAGTATTACCTCCAGTTCATTCATAATCTAAGAGATGTACGTCTTCAAAAGGCAAAAGAAAGAGAGCTGGGGGACACCAGAGATGAAGTTGACATTGGCATCAAACCAGCAGCAGGACTGCGGCCCAGAAGACTCTTGCTTCGTGACATTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87766 lncRNA upstream 3547 14193779 ~ 14194433 (+) False AMCG00014456
TU87727 lncRNA upstream 26968 14167446 ~ 14171012 (+) True G70221
TU87518 lncRNA upstream 501109 13694815 ~ 13696871 (+) True G70054
TU87516 lncRNA upstream 513488 13683043 ~ 13684492 (+) False AMCG00014423
TU87409 lncRNA upstream 817576 13377534 ~ 13380404 (+) True G69961
TU87784 lncRNA downstream 267396 14466704 ~ 14467744 (+) True G70271
TU87814 lncRNA downstream 980537 15179845 ~ 15180820 (+) True G70286
TU87887 lncRNA downstream 1040348 15239656 ~ 15242333 (+) False AMCG00014470
TU87927 lncRNA downstream 1151334 15350642 ~ 15430852 (+) True G70378
TU87973 lncRNA downstream 1251470 15450778 ~ 15451268 (+) True G70409
AMCG00014447 mRNA upstream 34658 14162125 ~ 14163322 (+) True AMCG00014447
AMCG00014446 mRNA upstream 37138 14160636 ~ 14160842 (+) True AMCG00014446
AMCG00014445 mRNA upstream 40254 14151299 ~ 14157726 (+) True AMCG00014445
AMCG00014443 mRNA upstream 54907 14138406 ~ 14143073 (+) True AMCG00014443
AMCG00014444 mRNA upstream 92486 14085512 ~ 14105494 (+) True AMCG00014444
AMCG00014458 mRNA downstream 24208 14223516 ~ 14235412 (+) True AMCG00014458
AMCG00014460 mRNA downstream 38703 14238011 ~ 14241495 (+) True AMCG00014460
AMCG00014461 mRNA downstream 103139 14302447 ~ 14342021 (+) True AMCG00014461
AMCG00014459 mRNA downstream 171837 14371145 ~ 14380019 (+) True AMCG00014459
AMCG00014457 mRNA downstream 253218 14452526 ~ 14462108 (+) True AMCG00014457
TU86705 other upstream 4189332 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6781386 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6848513 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9546016 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 137550 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 1476323 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1476323 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 1930217 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2266373 16465681 ~ 16469113 (+) False AMCG00014525