RNA id: AMCG00014452


Basic Information

Item Value
RNA id AMCG00014452
length 8882
RNA type mRNA
GC content 0.45
exon number 29
gene id AMCG00014452
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13965617 ~ 14002734 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgatgtttaattaatttgctttaattatCAGACAGTGGTAACCTCGATGACAGTTCCAACATGCTGTAGTAAATATGAACGACAAGCGGTGGTTATTTTATGTAGGTTCTTGTGCTGCAGATttgcgcggatctgcgctgctccaccaatgggatcggtgggattctgcacatctgcgcacaactgcggaaatctgcgctacgcGAACGCGACCACAACACAGACAGATGATTGCAAGAGCTGCTGCCGCCGCCGAGCTGCGCAAGAAGCGCAGCGCAGATCCCCGCGTCTTCCCCGGCTGCTGGCAGCTGCGCCTCTCCGGACCGCCGCGCTCCCCCTGCCGAGTCTGCGGCGCTGTGCTCCTGGCCGCGTCCCAAACTCCTGAAACCCAACACAAACAATTTCGggaagaaagggaaaagaagCCCAAACAGATCTGCAAACCGCACAGCAGCAAACCCGAGGCCTACTCACCCGGCGAGCTTGCGACTGCTTTGATTTTGCACTAGGATGCGGGGAAATAAGTGTGTGCGCTGCGCATCCGTCAGCTGCCTGCTCTTGCTGTTAGTTGCCTTCTGTAATGCTCAGCGATTTATGTCACAGAGAGGCGCATCGCAGTTTCTAATCAGAAGACGGAGGGCCAACTCCTTGTTTGAGGAGAGAATGAAAGGGAACCTGGAACGGGAATGCATCGAGGAACTGTGCAACACAGAGGAGGCCCGGGAAATCTTTGAGAACAATCCAGAAACCGATTACTTTTATCCGAGATATGTCGCTTGCCTGGGGTCCTACCGCGTGGGAATTTCCAATAACCCGACTTCTGACCTGGGGGTCCCATCTGACCTGAGAACCTGTGTGAAAGAAATCACAAACCAGTGCATTCCCCTACCCTGTTACAAAGAGGGCTACGAGAAGTGTATTGATGGCCAGGCCTCTTTCCGCTGTGTCTGCAAGCCTGGCTGGAGGGGAGAGAAATGTGACGAAGATATTGATGAATGTTTTGATGTTGAATCTCCTGCTGGCTGCAACCAAAAGTGCTACAACTACCCTGGCAGCTTCCGTTGTCTTTGTGAGGACGGCTTCCTCTTGTCGCCTGACCGGATCACCTGCAGAGATATCAACGAGTGTATACTGTACCCCAGCATCTGTGGGCCCGCTCAGTGTGTGAACACCCAGGGCATGTACCAGTGCAAATGCTCAGAGGGCTACAAGTACAACTTCACATCAAAATTGTGTGACGATGTGGACGAGTGCGCTGAGGGCATGTGCAGCTGGCGCTGTGTCAACACCCTGGGCAACTACTCTTGCCACTGCAACGGCCCTGCAGGCTACAGACTGGCTGCTGACGCGAAATCCTGTGAGgaaaTCCCCATCTGTGTCCCCCTGAAGGACCACAAGAACGCCGAGATGCTGTACCTGGGAGAGCAGTTCATCGGCCTGCCTGTGCTGTACCTGCGCTACAGACTGCCTGAAAACACAAAGTTCGCCGCAGAGTTCGACTTCAGGACGTTCGACCCCGAGGGCGTGATCCTGTACGCAGAGTCCTCGCAGAACTCATCCTGGTTCATGCTGGGGCTGCGCAATGGCCAGATCGAGATCCAGTACCGCAATGAAAACGCTTTCAAGTACACCACCGGGGGCAAAGCTGTCAATGATGGACAGTGGCACGTTATCTCGGTGGATGAGCTGGAGAAAAGCATCAGTGTGAAGATCTCCAAGGAGGCCGTGATGAACATCAACAGCCCGGACAGTCTCTTCACATCGGTAAATGGGATCCTGGAAACCAAGGTCTACATCGCAGGACTGCCGCGGAACACGGACGGCCTAATAAAACCGATTAACCCCCGGCTGGATGGCTGTATCCGGGGCTGGAACTTGATGAACCAGGGGGCTTCGGGGGTGAAGGAGGTCATCCAAGAGAAGGAGAGCAAGCACTGCTTTGTGGAGGTGGAGAGAGGCTCCTACTTTCCTGGTTCTGGACTGGCCCAGTTTGACATAGACTACAGTGAGAGCATGGAAATCGCTAGCAACTGGACTGTAAATGTGAAGCTGAACATTCGCCCTTCAACTGGCACCGGTGTGCTGTTTTCCCTGGTCAGCAACAACACAGTGCCCCTGTCCTTGGTGGTGTTGTCCAGCTCTGATGACGAAGCGGACATTGTGGTGTTCATTGAGAGCAAGCAAGTGGCTAAGTTACAGTCCAGGAAGCTGTGCTACCCCGGCAGGCTGCAGCTGGAGCTGAACGTGTCCAGCAGTGAGATGACCCTCTCGGCCGACTCGTCCACGGGTGTGCTCTACGCTGACAGCCCTGTGTTGCATGAGCAGCTGACAGTCCTGGACGCTGCCATGAATCAACACATTCACACCTACGTAGGAGGCGTTCCCGacgTCCCTTTAACAGCAACTCCAGTCACTGCGTATTATAACGGTTGCCTTGAGATAGTTGTCAATGGTATGAAGCTGGATTTCGATGAGGCCATCAGAAAAGACAACCGCATCAAATCTCATTCCTGCCCACCTGTCTGAAGGACCTCTGCTTTGGAAGCTGGctgtttcattttgaaatctcTTGATAACTTCCATACACGTTCACGTTCTGCTGTGAAATCTCTGAAATGCCTTGCTAACTTGTAATGATGTTAATAACACtagtattaaaaagaaaaacaatggacATTGAAAGGgggtacagatttattttaattttgatgatagaacaattttttaaaatagaaaataaataaactactcTATAGATTGGACTAAGGATCTATACAACTGTCTCTGTAggtgtttacattttacatgtacatAAACACAATTCCTTTAATATATATCAACACATATACAGTCATTGAACTATCATCTGCTGTTGGTTTATGGTGTTTTGAAGACTCGTTTTTTCAACAGTGTTAAAGTTTGTGCattagtatatttattattagacCAAGGCCTACATTTAATTTTCGAGTATCTTACTAGAAGCTATGAATGAGCATAGGCCTAAACTCAAGGTGGAACCATAATACTAAATTCAGACGCCGCCACTGCATTTAGACTATAAGATTAAACGCCAGTCATGTGTGGCCGTCTGTAAGTAGAAATACGGACATCTTATGTATCCGTCTAGTTACTGAAGGTATTTAAACAGGTAGTCCAACAAaactgatgaaaaaaaaaaaacattacaacacaacacaagtaTGATGCTTCTGCATTTTAAGAGGATACTGTAATATGTCAGAGTACAGTGCTTTGGAAAATTGTTCAGTAAACTTCTTAAAAATATTCTATATTTGTTGAGCACTGATAAAGCCGGCAGAAAACcaaagattccagttgactgaaTTGAGTTTAGGTGTGTAGCCTTTGAATGACACTATAGGGAACAATAATTTGGTAAACATGTTTACACCCCCCAATATAATTCAGTCAACTGGGATCTTTAGTATTGTGTAGCCGGAATCAGTTTTCAACAAACCCTGAAAAGATGTTATTGATAAATACGTATACTTCAATTTCAAAGAATCCCCAAATTAAATTGTgtcaaagggtttgaatacttttaaCTACAACTGTCTGCatttatatattagtttttGCATAGCCATTCAATATTATGAGACTTGAAGTGAAGAGGAATTAATCACTGGCcctgttaatataaaacagttatttaaagTTGATTTCTGTGTACTCACTACTGAGATACTTAACACAGGTAACACAGAGACCTGTCCTACACATTACACAGTATCATATACTTTTTCCCAGTAAGTTCATATCATCCTGGTcttaaacatttcacacaatGATGGCACAATTCCAGATGCCCTTTGTATGTAAAttagaaaagtatattttatgttttcagttaaaaaataataaatgttttgcttttttagaTTAATCTTTTCACCTAATGTACTTTAGAAATGCATCAGTGTAACCTAATATTGTCTGTGTAAGTATAAAAGTGGCCTAAAGGAACTACGATTGTGTGTAATATCTTTCTTCAGTGTTCTGATTGCACAAATGAACTGTAGCGAGATCCACTGAACAACAAACTATTAGAGATTTTCACTGGGTCACATCAGACAGCAGACTAAGAGTGTCATCAGCACAATGCTGTCAGTGTGTATGCACAAGTACTCTAAGAGATGTGTATCCTCCTTGTACAACTATACACATAATTAAAGAGTTAAAAATGTGGAATATGGAAAATGTGATAATGCTTATATCAAGCTAGTTTCATGCGTGCAGGTTGTTTATGTGCAGAATTGCAGTGGGAAGAATTGCCCTCAACTGACCACCCCATAATCATGTGGTTTCAGCTTTATGTTCCTTAACATACAGCTGTCCtgcttattttttcacaacACAGGGCCAAGTGATACTACTGAGCATGTACAGCAGTATGATTAACGGAATCATCTAATAATGTAGCACAATACTTTAGTCTgatcttaaataataatcattgtaaataatagaaaataaaattcaCTTTTAACTAAGTTCATGTTTATACGTTTGTATACATATGACATTGTTGCATCATAAAATAAACTCCttgaagggaaaacaaatcagGCAATTCTAGTACCTACAGTAGCAGGTGATTGTGAAGGTCACAAGGATGAAACTAGAGCAATGCAAACATGTACATATAAACTCAAATGTGAGATGTGTCAACACTTATATCAGTTGAAATGATGCAACAGAAGGGCGGAAgttcaaaatgcatttacacCACAGTCGAGCACATTGGAAAATTAATTCTATTACAGCTCATCAGCAACACACCCTCCAACTGATCTCCAAGCTGCGTGCATGCAAGCGAAAGCAGAGCAGACTCGGCAGccgcagcgcagcgcagcgcagtGCGTGTCATCACGGGCTGCAGACGAGGAGCCGGAGCTGCCGACCCTGCAGGGAAACGTCCCCGAGCTGACGCACGCAAACAAACATGCCGCCGAGCTGCGCGGAGCTGCTGGCGCTGTGGCTGCTGTTCGCGCTCTTCTCGGGCTCTGCGCAGTTCGCATTGTCCCCGAAAGAGGCTCACCAGTTCCTGGGCAGACAGAGGAGGGCGAATCACGTTTTTGAGGAGACCAAGCAGGGGCATCTGGAGCGGGAGTGCGTGGAGGAGAAGTGCAGCAAGGAGGAAGCCAGGGAGGTCTTCGAGAACGACCCGGAGACTGAATACTTTTATCCAAAGTACTTAGCTTGCATTGAGAAGTTTGGAGATTCAGAAAAGAAGAGACAGGATCTGCTTACCTGTGTACACAATATTCCAGACCAGTGCTCCCCTTCACCATGTAACCCAAAGGGGACTTCACGGTGTGAGGACAAGAAGGGAGATTTCAAGTGCCACTGCTTCACTGGCTGGACAGGAATCCAGTGTGAAAAAGATGTAAATGAGTGCTTATGGAAGAAGGGAGGCTGTGACCATGTGTGTGTCAACACCATAGGGAGTTACAGGTGCTCCTGTTTGCCTGGTTATGCCCTTGCAGACAGGCACAAATGTGCAGACGTGAATGAATGCAGAACAACCCCAGATATCTGTGGAACAGCAACCTGCAGCAACCTAGAGGGGACATACAGATGCCTTTGCCCAGAGGGATACTATTATGATAACGTCACAAAGGCATGTCTAGATGTTGATGAGTGTGGATCGGACGTGTGCTCAGAGACGTGTGTGAACACTCCTGGTAGCTATCGGTGTTACTGCGATGGGAGAAAAGGAGTGAAGTTAGCACGGGATCTGACAAGCTGTGAGaGCATCGAGCCATGCATGTCTCTGAATGTGAAGAGAAATCCAAAGTCTCTGTACCTGGGCAGGATGTTCAGTGGGGTCCCGGTCATCAGACTGCGATTCCGGCGAAAGGTGCAAACTGGGTTTAGTGCAGAGTTTGACATAAAGACATTCGATCCAGAGGGCGTTATCTTTTTTGCTGGTGGCCATCTGAACAGCTCCTGGATAGTTCTATCAATGCACCATGGGAAGTTGGAGCTACAGCTGAAATATGGACCAATCAACCGAGTGACCAGCAGTGGACCAACTGTAAATGACGGACTTTGGCACAAAATTTCTGTGGAAGAGCAAGGCAGGAGTTTGATTATTAAAATCGACAGGGAAGCTGTGATGAAGATAGCTGTGAATGGAGACCTGTTCACACTGAAGAAAGGCATGCACGAGCTCAATCTCACAGTCGGGGGGGTTCCTTTCAGAGAGGGAGATCTTGTGAACATGATCAACCCTAGGCTGGACGGCTGCATGAGGGATTGGAAGTGGCTGACTGGAGAGGACACGTCCATCCAAGAGACCATTAAGATGAATGAGAAGATGCAGTGTTTCTCTGAGGAGGACAAGGGCTCTTACTACCCTGGCAGTGGCTTCGCTTCATTCAATGTCAGTTACGGTGACAAGGGTGTTGGGGTGGACTGGGCTGTCAGCGTGCAGTTGAGCATCAGGCCATCCTCCAGTCCAGGAGTCCTGCTCGCCATTGTCAGCGGAGACGCGGTGCCCCTGTCTGTCGCCCTGACTGACTATCACCCCGGGAAGAAGCTCAGGCAGCAGTTTGCAGTGCTGTCGCTGGCAGACGAGATCGTGTCCAGTGTCCTGCTGGGGATCTGTGACTCCGAGACACGCTCGCTGAATGTCACCGTGAGGAACGACCTCGTGCTGCTGCAGGTGGACGGGAGGGCTGGGCAGATAGACGTGGACCAGGCACGGCTGGAGCAACAGCTCTCTGTCCTGGGCAGCCTCATCCCAGGGCCCGTCAGAACCTACTTGGGGGGTCTTCCAGATGTGCCGGTGGTGTCCAGCCCAGTCTCGGCTTTCTACAGCGGCTGTATGGAAGTGCTGATCAATGGAAAAGCCGTGGACGTGGACGACGCTCTCTACAAGCACAACGACATCCGATCGCATTCCTGCCCTCCTGCCCAGCCGCTCACTCACCCTTAGCACTGCTTGATTTGGTTCTTACTCTCCTACAgaatgacacattttatttatactagAATATTCACTAGAGCACTGCACCAGTTTCTGAGCTACTGATAAGGACGTGTCATctgcaaaactaaaaaagttttgtttgactgtactgtaatatatgtgtaaatatttaattctttCTGTTGAATggttttaagacattttaagaaaCAGGCCAAATTCAAACTCAGTCTAATTTCAAATCATGCTAAGCTCCTAAGCATTCCAAAATGGGGTTGTCTGTTCACATCGCTGGCAGGGAGTTCTCTTGCAACCCCCACGATGTAGTCAAATTTGCAAGAATTTGCTTTCCCATCCTCCCCCACTACAGTTTAGACTGTCGTCACGTTGACTTTATTGGACAATCTCTTCTCCTAAAGCTGATTCTCGTCaccttttgtgttttggttgtactcgtattgtatattttaaagttcatattgttttttcttactGTAAAATCACCCAGTGTGTTCTTAGCTGACTGggtgggactgtgtgtgtgttttttttttttacagaaatatcaagtaagtgaaaataaacatgattactAAAAAAATCTAGTTTTTCAGAAAGTTATGACCGGCGGTATGGAGCTTTGATTATTTAGGGAGCGGGGGAAACAGGGTTTGGCTTTTGTAACTCTTATACCTGATAAGCCTATGTGTAAATTAGTCACAATAAATAAGATTGGGTTTTagttgtccttttttttttattacaacatTGCACTAAacaaagttaaaagaaaaagcaaattaatttcagacaAAGAGCACAAAGGTTATTCTATCGTTTTAGTGACATCAGCAGAGGCTTTCTCTATGGCCTTTTGGGTACAAGTCACTTACTTGGTTAGTCTCCAGACAAAATGAGGCACAATAAGATGGTTGGATAATATTCCTTTACCAAGAAGATGTATGTAGAGACAGTCCCCATATAGTCAAACTATGAAAGACAAGTGCCTAGTTTTACAAGATGTGACAGAATACAACAGTTTATAAGTATGGCTGCTCTATTGTTATACAGGTTCATTACTGGGTGTTTAACTGTCAGTTTACATATTCACCTTCCGTGACACGAACCAAAGTTAACACGTTTCTGCTACGGCCTTTGCTTCCCTTAGATGGAACAACAGCACTAACTATATATCCTCTACATACTATTTGTAACAgttaataagaaacaaatcGTAAAGGATATCGTAAAGGATATCACGCAGCGGTCAGAGAAGATTAACATCATTTTCAAACTTTGATATAACCATAGATGATCTATTCTGTCATTGGGGAAGCTGTAGATATTGTTTAGtgttacatgcatttttttgtatgacCAGCTCtggaaatagattttaaattaatgtcacTGAAgatcaaaaaatacaattactaaTGTCAGTcaggtaataaataaataaataaataaataaataaaaaacagaagcatCAGCATCACACTACAATAGACACCACCCACCCCAGCTGCTTGTGAAATTGCTCCATTGTCCACATTAGccaataaatcattattattattattattattattattattattgtcaccACTTTCAATATGATGGTCAGGGAAAATGTCAGATTGAGCACACTTACGTATTTCATTCCTACTACACTCTTATGCAGAAATATGCAATTGCTTTATGgtgccatattaaaatgttcaaatgatATTTAATACCTACAGGCATATCCTCAATTCAGCTCCCCCAGAATATGTCTTGGGGCTTtgtcttaaaatgttttccccTATTCTGCAATAAaattggatttttgttttggttactACTGCTGTCAAAGTTACAATATAACCTTGTTTTCCACAAGCTTTGTTATTTCAACTTCCAGTTCCTTGTGTGcc

Function

GO: NA

KEGG:

id description
K03908 PROS1; protein S

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87667 lncRNA downstream 44287 13919521 ~ 13921330 (-) True G70169
TU87572 lncRNA downstream 193345 13770177 ~ 13772272 (-) True G70094
TU87569 lncRNA downstream 204197 13759226 ~ 13761420 (-) True G70091
TU87527 lncRNA downstream 268646 13694757 ~ 13696971 (-) True G70063
TU87498 lncRNA downstream 342236 13623115 ~ 13623381 (-) True G70034
TU87744 lncRNA upstream 96630 14099364 ~ 14102156 (-) True G70238
TU87845 lncRNA upstream 1043118 15045852 ~ 15059774 (-) True G70315
TU87890 lncRNA upstream 1236069 15238803 ~ 15242333 (-) True G70346
TU87964 lncRNA upstream 1371504 15374238 ~ 15376774 (-) True G70402
TU87969 lncRNA upstream 1380899 15383633 ~ 15386700 (-) True G70407
AMCG00014450 mRNA downstream 36194 13923599 ~ 13929423 (-) True AMCG00014450
AMCG00014433 mRNA downstream 83494 13866643 ~ 13882123 (-) True AMCG00014433
AMCG00014431 mRNA downstream 100767 13853162 ~ 13864850 (-) True AMCG00014431
AMCG00014435 mRNA downstream 119132 13828455 ~ 13846485 (-) True AMCG00014435
AMCG00014436 mRNA downstream 175482 13784915 ~ 13790135 (-) True AMCG00014436
AMCG00014451 mRNA upstream 2457 14005191 ~ 14041867 (-) True AMCG00014451
AMCG00014455 mRNA upstream 104561 14107295 ~ 14108479 (-) True AMCG00014455
AMCG00014453 mRNA upstream 117112 14119846 ~ 14137980 (-) True AMCG00014453
AMCG00014448 mRNA upstream 141429 14144163 ~ 14147502 (-) True AMCG00014448
AMCG00014449 mRNA upstream 164712 14167446 ~ 14178388 (-) True AMCG00014449
TU87063 other downstream 2303124 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 3167470 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 4648450 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 5581393 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 5807027 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 14327005 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 15386556 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 18260433 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 18594728 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 18594728 32597462 ~ 32619149 (-) False G73127

Expression Profile