RNA id: AMCG00014431


Basic Information

Item Value
RNA id AMCG00014431
length 6485
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00014431
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13853162 ~ 13864850 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGCCTTTTTAGGAGATACCTGATACAGGCACACTGGCTTACAATGACCAGTACTGATAAAGCACAGCTGGGCTGGACTGGAATGGGGGGTTGGGGCGATTAAAACAACAGTCCAGAGTGAGGAAGCAGGTCTCTGACTGCAGTAAAGACAACAGTtagaggaaggaggagaggagaagtgAGTGAAGTAAACAGAATTAAATTGGGTGACTGGGAGGAGAGTTGCTGCACTGCAGAATTGGGATGGAACTGTTCCAGGCAGCCATGGTGCTGGGGGGGGTAGGGGATGCCCTGGGCTACAGGAAAGGCAAGTGGGAAAGCTGTGCCTCAGGCCTGCTCATCCAGGAGGAGCTGAAAACCCTGGGAGGATTGGAAAACCTGAAGCTGGATGCCGACAACTGGCCGCTCAGTGATGGGACTCTGATGCACATGACCACGGCGGAGGCACTGATCACAGACTACTGGTCTCTGGAGGACCTGTACCGGGAGCTGGTGCGGCTGTATGTGAGTGCCATGGTGAGCATCCAGGGGCGGCAACCTCTCCCCACCACAGTGGAGGGCTGCGCCAACCTCAAACCAGACAACTACCTCCTGGCCTGGCACACCCCCTTCAATGAGAAAGGGTCCGGATTTGGGGCTGCCACTAAAGCAATGTGCATTGGAATGAGATACTGGCAACCTGAGAAACTGGACAACTTGGTGGAAGTGAGCATTGAGACTGGGCGCATGACTCACAACCATCCCACTGggtTCCTGGGCTCCCTGTGCACAGCCCTCTTTGCCTCCTACGCGGTGCAGAAGAAGCCGGTGGTGCGGTGGGGCAGGGACATGCTGAAGGTCATCCCCATAGCAGAGGAGTACTGCAGGAAGACCATCCGGCACATGGCAGAATATCAGGaaaactggttttattttgaggCAAAATGGCAGTTTTacctggaggagagagaaattGAATTGGATGGACAGGACAAGCCCCTCTTCCCGGAGTGCTATGATGCGGAAGAAATGGACAAGATATACAAGCGCTGGAGCTCTGAGGGTCGAGGGGGGAGAAGGGGACACGATGCCCCCATGATCGCCTACGACGCTCTCCTGGCTGCTGGCTCCAGCTGGACTGAGCTGTGTAAGCGGGCAATGTTCCACGGAGGTGAGAATGGGGCCACAGGATCGATAGCAGGCTGCCTGTATGGACTCCTGTATGGACTGAAACATGTGCCCACGTGCCTGTGGCAGGACCTGGAGAAGAGAGAGCGCCTGGAGTTCCTGGGGACTGAGCTGTTTAAAGCGGCTGCAGGCGAGAAGTAACTTCACTGTTCCTGCTCTGAGGCTGCTCTCTTGCCTTCTGCCTCCTCACTATATTGGTTTcaaagtgtatttgtatttgaatcttATTTTTTTGCTCTTCTGTATATCGTTTTTTTGAACGCGTTTCAGTTCCCCTCCAACCGCACATCAGATCCCTTTCCGTATTTACTCCCTTTTACAGTTTGGCATGTTACGTTTTTATGTAAGGTAGACCAGCTGCTGTAATTATCATCCGAGGCAGCCGCTGTGGTGCTCCGTCAGGGGGAGTGAAGAGTGACAACCTTGGGTTCACAATTAATCTTCCCCGATTACAGCGGGAGAGCTCAGAGCGGGCCTGTTTACTTCCTGATTAAGTTATCTTTAAGCACTGCATTTTGACACATTCGATCTCCACTTAAGCTTTGAGATCATTACATTAACACATACTTTTGGTGTGTAATGCAAATTTACTAGCAAGATTTATTTTGACCAAATTACTTGGGCTATGGTGCCAtattatcataatttaaaaagcacaccctgacaataatatatgaatgattTATTCTTGATAAGGCCAGTATTagggtgtttttttatgtatatatgactTGAGGAAGTACAACAACCCACTGTACTTCTCAACTGGAATTTCACTCGACTCGAGAAACCACAAGGAATGATtgcagggtggggtggggggggcctGAATGATTTACACAGTATAAAACtcattaacaatattttaaaactcaATGGTTCTTACAACCATGTCAGTTCCACCAGATGGAAATCAAGACCAAATGTAATAGGTTTTGAAGAGTATTGGTATCTTTACATGTTTATTCCTTCCTGTACTACTTAAGCTAACACTATGCAAGAAAATCAGAAACATGTTTAGAGAGAACACACGTCAGATTTACATGATTCATGTGAATGAAGCCTAATGTCAGTGTGCAGAATCCAATTTACACCGTCACTGCTCTCCTCACTGCTTAAAGTAAGGATGATTTTACCCTCCGTTCACACACGTTGGAAAGAGATTAACTCCTGGTCACCTCAGTATGATATGTACCATATTACCATTATGTTCTGCCCAGAATTTGTTATCCAGTGAGCATCTTAACTGCCTGACCCTCCATCACCCCTGCACTTCTCTGCTGCACAATGCTTTCGGCCAGTGGCATTGCTAATAGAGTAAACACAGTCAAACTCACCCTTGCAGTCATCAGGATGCATCTCACATAATTACTAAATTCTGTAATCTTGTAATGATAAATACAGACATAGATGTCACGAAAGAACCCctacccaaaaaaaaaagactccagttctctggagaaaacaaaaatagtcaaAATGTTTTATCTTGTTCCCTGGTAGGCTTTTGTAGAATGTGCTCAACTGCCTAGACAAGTTGGTGGCAAAAGAGGTTAACAAGGTCCACTTGAGATACCACAGCCGCTCTAGAGAGATGTGAAGCAGATAAATGGatggtattttaataattactttaaacTTGAGATGCAATTACATTGTTAGGCAGAATATCTAAGTAACTTGTGAACAAATAGTGAAATTcttgttttgtaataaaatgttctaTAACAACATCAGCCTAATACTGCGAACAGAGCCATCCTTTACAGGGGTTCAGCTTAATTTCAGTGACTTTATTCCCCTTTAAATTAGAAGGCGTAATTGACCCTAATTTCTTTCTAAGATTTCTAAAAAGAATGTTTCTTCCCTTTTTCACTTCACTTCCACAAATAACCCACACATACAGGATCAGGATAGGAAAACTGTGTAAATAACACTGCTGACCTGTAACCCATACTGTGTACACTGCAAGTCCCACTAATGTCTGAGTGtgcaaaaaaaggaaatctattTCACCCAGAAGCAGGAGATCTACTTCTCGGAGCAGTACACCTGCTGTGGATCTCGCCATGCTGAGACGGGCCGCCACCGCTAGAGTCGTCAGCTCCGGTGCCTGTGAGGTTCTTAGTAGTCTGCTGCACTATCTGACCCAGTCACTCAGCCCCCTAGCACCTGAGCCACCAGCACAGTTCACCACACCTTCGGGAAGCACGGAAGACCACAAACAGGGTCCAAGTCGACTGAAGAAAGACAATGGCAAACATCCAACTGCCTTCCAGCTGCTCCAGTCAAGATTCATGAGAGAGAACCGAGAGCCTgagaggaagagaaggggaGATGTTGGGATACTGGTGCCCAGGGGGCGCTGGGGGCCTTTAAGAGAAGACAGTCACAAGGGCAGCAGGAGGGAAAGCTTGGAGATCAAAGGAGGGGTGAAAAAGAGAACCACAGACTCCAAGGGCACAGTCCAGAAAGTTTTAGCCAAGTTTGCAGCCGCCAATGAAAAGGAGAAGGGTCTGgtaaaaaacacagacagaccacTCCCAATAATGAACCGAAGAGGCAGAAATCCAGTGCTGTTAGCCATGATGGAGAGATTTGAAGTTATTGGCACTATTCGAAAAGTTGAAAACTTGGCCTATCAGACCCCAAAAAAGGAATCAAAGCATCCAAGGACAAGAAGCTTAGTTAAACAAGGAGCGCAGAAACTGCAGTTGCTGACAGAAGTAGAAATATGGACCCAACCTGCAGTCTATCACGCACTTGGCAGTGTGGAGGCCATGCCTACATTGTACCTACCAACCATTCTCCTCTGTCCTGTAGTCTGGGGCAGGGCTTGCTGTAGATTTCCTTGTGCTGCCACCAAGGACAGGACACCTCATAAAGCAATAGTCTGTGCCCCAGGTACTTCTGAACTTGAGACTCTCAGAGAACCAAAATGccaacattcagaaacagaagaCGGGAATAGTAGTGCTATCACACTCTGCACAATGCCCAAGGTCACTTCTGAGCATTGTGATTCAGTCCAGCCTGAAATAGATGGGCCAAAACAAGAGGCAGAATTGCTCCCTAATCTCAGCAGCTCTTCTGATGTGTTTCAATGTAAAGCTGATGCCTCAGATGCCATTCCTGCTTTATCTCTGTCCTGTGCAAGCCCAACAGCTGGCTCTGGGCAAGAAGTGCATGAATCTCTAAGCGGTGATAAGGCTTTAAACTCTGAGAATATCCCTCTAGATTCACCACTCCGATCACATCCTGCCAGAAAGCGGTCTCTCAAAGCACCTCATCTCGCCAATATCTACAGTCACACTTTGCCACAAGACATTACACCAATCCCAGAGTCAACCCAGACCAAAGCAAACCTCTCCTTGGCCACTCAAAGGCATTTGCCAGAATATTCTTCCCTCAAGGACAGTggatctctctctccacagcaaACACAAGCTTCTGTAAGCATTGTATCCTGGAATGATGATTCAAGACCTCCGATTACTTCAACATCGCATTTCCAATGTATGCAGCCTGTGCTATTAGAAAATAACCTCCCCTCACATTCCAGGGATATTGACAATGTGTGCCACACTACAAACAGCCAAACACTTTGTAAGACATTCAAACATCCTGGAACATCTTGTACAGCCTCTTTCAATGAAGCCACACTTACTAGCTTAGTAAGCAGCACATCTGGAGACAAGGACGAATGTCTGCAAGGTAAAGAATTACTGGAAGAGTCACTTAGACGTGGATATGATGGAGTTAATCTGGACAGAGATAGCGAGGGTATTCATATAAAGGATAATTATAGTGTAAACGGTGATGGCAATCTCCCCATGCTTAGCTCAACTAGTACTGGTGATGGATTAGGGCTGGGCAGCACTTCTGACAATAGTCACATCAGCTCAACAACACCAAGTCATCCACTGACAGCAGGAAGAACTAAGGAAAGCCCTGTTTGTGGAGACGTGTGCAAGTACAGGGCAGAAAGCTACAGTGATGCCTCTGTGTCTTTGAAAAGTCCCTTTAAACGTAAAGTCATCCGATGCACTGacacttttcagttttaatcCCAGGGCACTGTACTCAAATTCacattaaattcatttttatttcatggatTGGCTTCCTGTCATTTCCATTCCATATGACTTGTTGTGTTCACCATTCATTTGTTGGAGTGAGATTAAcctgtactgtttttattgttttgacaatacattaattttaattatgtgaaaaacaaaacatttcagatatGCATAACAGCAATGAGAATGATTCtccatctatttttttttttaaatcacacattcagtAGCAAATGCTTCCAGAGACCATGTTCAAAACTGATTTTTCACAGCATTTTACCTCTACAGGaattaaactatataaattCTGTCTAAGGGATTGTAAAAGGTCTATAGAATTCTGTTCAGACTTGTTTTGTACTTTCTTGCATTTATTaagtgaaaactaaaataaataaatgaataaatacagttttaatctttattgtataataagaataattccTATCTCAGTAGCCTGGTACAGCAGTGTTCAAGCATGATGAGAGCACTCCTGCCAGACAATGGAAGATAAGCAGGTAGTGAGAGGCCACAGACATAATGCAAAGTCAAACTGGAGTGCGAACTAAGTCAAACTAACCAGcacttcattaaaaaagaaaaactaaaacggGCAGATTACACATCACACCTCATACATTGTTGTCTGTCTTTTAATATGGAGGTGCTTGAAATGAGGAGTAATTCATTGTTATTGCATTGTTACTGCAATCACAATGATTTTTCTGCAacgtatttaaaaacaaatgactcaTGAAGTGactgtgaaaatgttgaaatccTTTACATGAAGccttaattgtattgtaaagtaTTGCAACAGAACATTGTTGTTGAAAGAGACTGAATACTATAATTGATTTATAGACTGTGTACTTACATGTTGTTAAAAGCATCACAGcaataatcaataaaaataatcaataatcaataataataatgtcaataatgtttttttcattgacAAATTTGGATTGTAGGCTTTCAGAAGGAATTGTACTAATAATAGGAATATTACTATCCTTGGAggatttcatttaatatatttatgcagagcacaaaaacaagtacaacatatacacatacatgacAATCTTACAAATGTGTCTAGACATTTTCGATGAAATATGATACTATATCTTGTAAGACTGATTGTATATCCTTTGTGAACCTTTATATACTTGTAACAGAGTAAAATGTTATCTTAGTCCTTTCTGACTGGAGTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87572 lncRNA downstream 80890 13770177 ~ 13772272 (-) True G70094
TU87569 lncRNA downstream 91742 13759226 ~ 13761420 (-) True G70091
TU87527 lncRNA downstream 156191 13694757 ~ 13696971 (-) True G70063
TU87498 lncRNA downstream 229781 13623115 ~ 13623381 (-) True G70034
TU87421 lncRNA downstream 477283 13304426 ~ 13375879 (-) True G69973
TU87667 lncRNA upstream 54671 13919521 ~ 13921330 (-) True G70169
TU87744 lncRNA upstream 234514 14099364 ~ 14102156 (-) True G70238
TU87845 lncRNA upstream 1181002 15045852 ~ 15059774 (-) True G70315
TU87890 lncRNA upstream 1373953 15238803 ~ 15242333 (-) True G70346
TU87964 lncRNA upstream 1509388 15374238 ~ 15376774 (-) True G70402
AMCG00014435 mRNA downstream 6677 13828455 ~ 13846485 (-) True AMCG00014435
AMCG00014436 mRNA downstream 63027 13784915 ~ 13790135 (-) True AMCG00014436
AMCG00014428 mRNA downstream 110343 13728703 ~ 13742819 (-) True AMCG00014428
AMCG00014429 mRNA downstream 143875 13697335 ~ 13709287 (-) True AMCG00014429
AMCG00014430 mRNA downstream 316793 13531195 ~ 13536369 (-) True AMCG00014430
AMCG00014433 mRNA upstream 1793 13866643 ~ 13882123 (-) True AMCG00014433
AMCG00014450 mRNA upstream 58749 13923599 ~ 13929423 (-) True AMCG00014450
AMCG00014452 mRNA upstream 100767 13965617 ~ 14002734 (-) True AMCG00014452
AMCG00014451 mRNA upstream 140341 14005191 ~ 14041867 (-) True AMCG00014451
AMCG00014455 mRNA upstream 242445 14107295 ~ 14108479 (-) True AMCG00014455
TU87063 other downstream 2190669 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 3055015 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 4535995 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 5468938 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 5694572 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 14464889 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 15524440 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 18398317 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 18732612 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 18732612 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001450 True 1538 mRNA 0.55 8 NC_007112.7 200294 ~ 206208 (-)