RNA id: AMCG00014748


Basic Information

Item Value
RNA id AMCG00014748
length 4456
RNA type mRNA
GC content 0.53
exon number 24
gene id AMCG00014748
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29615521 ~ 29643703 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTTTGCGACCATATGTGCGGCTGAGAGCTGAGCATCGGTGAGCGGCGAGGAATTGAGTTTAACACAGTGAATCCACCATACAGGGACAATGGGcaagaagcagaaaaacaaagggGAAGACAGCAGCAAAGACGACATTGACATCGATGCCCTGGCTGCTGAAATAGAAGGAGCCGGTGCCGCCAAGGAGCAGGACTCCTCCAAGGCCaaagggaagaagaagaagggtgGCAAGAAGAACCAGGAGTTTGAcGAGGATGATATTCTCAAAGAGCTAGAAGAACTCACATTAGAAAACCGAGGAGCCGCATCTAAGGAAGCTAAGAAACCAGACGCCGCAGAGGAAGAGGCAGAGCCGTTCCCGTTCAAGGCGGAAAAGAAGAAGACCCGCAAAGGCAATAAGAAGACCAGCGTGGacgaggatgaggaggaggaccAGGGTACTAATGACATGGAAGATGACGGCAGGAAAGCCAAGAAGGAGGCCAAGTCGGGACAAACTGCTCCTCCTGTTGGTGCTTCTGACTCTGAGGACGATGACACCAGGGCAGCCAAAAAGGGCAAAGGGGGAAAGAAGGGGGCCAGGAAAGAGCCCTCAGACTCGGACGATGAGGATCGTGGTGCGAAGGGCAAGCAGGCGGGCTCGGCGGGCGACAGCGAAGACGACTCGGACGATTTCTCTCAGGGAGGCAAGAAGGTCCAACGCAAGAACCAGAAGGCCAAAGCTGGAAAGGTATACAgtggtggggaggaggaggaagaggacacGGGAGCCTTTAAGATGAAGACGGCGGCGCAGAAGAAGGCCGAGAAGAAGGAGCGGGAGCGCAAGAAAAAGGAGGAGGACAGGGCCAAGCAGAAGAagctgaaggagaaggagaaggaagaggaggagaaaaaggcCAAATTGACCGAGGTGCCTAAGAATGGAGAAGCCAAGGAAGCGGATACTGCAGCGACTCCCAACGATGAGAGTAAGAAACTAGAGAGTGCTGTGTCGCTGGAGAAGGAGGGAGCAGAAGCCTTGGGAGAGGAGGATACCGAAGGTGGggacaagaagaagaaggataagaagaagaagaagggcgagaaggaggagaaggacaAGACCAAGAAAGGCCCCAGCAAAGCGACTGTCAAGGCCATGCAGGAGGCTCTAGCCAggatgaaggaggaggaggagcgcgCCAGGCAGGAGGAAGAAGAGCGGGTGCGGCgtctggaggagctggaggcccAGAGGCTGGAACAGGAGAAACTGGagcaagaaaggaaagaaaagaagaagcagaaagagaaagaaaggaaggagcGCTTGAAGAAGGAAGGGAAGCTGCTGACCAAAACACAGCGGGAGGCCCGTGCCAGGGCAGAAGCCACGCTCAAACTGCTCCAAGCACAGGGTGTTGAAGTGCCATCCAAAGACTCCATGCCAAAGAAGAAGCCTGTGTATGtggacaagaagaagaagaagcagccCACACAACAGCAGACCCCAGATGAACGAGCAGTGACTTCTCCTACTGCAGAAGCTGCACAGCCCATCACTGTAGAGACCAAAGTGGAGGCTCCAAAAGTTGAGAAAGTtgTGAAGGAGCAGAAAGCCGAGGCAGATTTGGACGACTGGGAGGCCATGGCCAGCGATGAGGAGAAGGAAATGAAAAAGGTCCACATTGAGGTGAAGGAGACggagcagcaacagcagcaggaagaggagggcagcgaggaggaagaggacgaggaggacgaggacgaggatgaagagagcgaggaggaggaagaggaggaaggcTCGGAGGGGAAGGAGGCCCAACCATCCGAGGCCAAGAGGCCACCGGGCAGGAGGACCAGCAAGGACGTCAGCTCGGActcagagagcgagagcgacTCGGACGACGGTCGCACCAAAGAGGAGCGGCTGTACGACCGGGCCAAGCGGCGTATAGAGAAACGGCGGGCCGACAACCTGAAGAATACCAATCTAGAGAAACTGCGGTCTCCCGTCATTTGTGTGCTAGGCCACGTAGacactggaaaaacaaagatTCTGGATAAGctgcGCCACACACATGTGCAAGACGGTGAAGCAGGTGGTATAACTCAGCAGATTGGCGCTACCAATGTCCCCCTGGAGACCATTGTGGAGCAGACAAAGATGGTGAAAAATTTTGAAAAAGAGATTATCAAGATCCCAGGCATGCTGATCATTGACACACCGGGACACGAGTCCTTCAGTAACCTGAGGAATAGAGGGAGCTCGCTGTGTGACATTGCCATCCTGGTGGTCGACATCATGCACGGACTGGAGCCCCAGACCTTGGAATCCATCAATCTGCTGAAGGAGAAGAAGTGCCCCTTCATTGTAGCTTTGAACAAGATCGACAGGTTGTACGACTGGAAGAAAAGCCCGGACACGGATGTTGTGGCCACTctgaagaaacagaagaagaacACGAAGGACGAGTTCGACGAGAGGGCCAAGGCCATCATTGTGGAGTTTGCTCAGCAGGGGCTGAACGCAGCTCTGTTCCACGAGAATAAGGACCCTCGTACTTTCGTTTCGCTGGTGCCCACCTCGGCCCACACAGGCGACGGCATGGGCAACCTGATCGCGCTGCTCGTGGACCTGACGCAGACCATGCTGGCCCGCAGACTGGCACACTGTGATGAGCTCAGGGCACAAGTCATGGAGGTGAAAGCTCTCCCTGGGATGGGCACCACTATCGATGTGATCCTGATCAACGGTGTGCTGCGGGAGGGGGAGACCATCATTGTTCCTGGGGTGGAGGGGCCCATTGTCACCCAGATCAGAGGGCTGCTGCTGCCCCCGCCCCTCAAAGAGCTGCGTGTCAAGGGGGTGAAGATCCTGGGGAAGGACCTGGAGAAGaccctggctggcctgcctctGCTGGTGGCACACAAGGAGGATGAGGTCCCTGTGCTGAGGGACGAGCTGATCCGGGAGCTGAAACAGACGCTGAACTCCATCAAGCTGGAGGAGAAGGGGGTGTACGTGCAGGCCTCCACCCTGGGCTCCCTCGAGGCCTTGCTGGAATTCCTCCGAACGTCCAAAGTGCCATACGCAGGAATTAACATCGGCCCCGTTCACAAGAAGGATGTCATGAAAGCATCGGCTATGCTGGAGCATGACCCTCAGTACGCCGTCATCCTGGCGTTCGACGTGAAGATCGAGAGAGACTCCCAGGAGCTCGCCGACAGCTTAGGCGTGCGCATCTTCAGTGCCGAGATCATCTACCACTTATTCGACGCCTTCACAAAGTACAGGGAAGACTACAAGAAACAGAAGCAAGATGAGTTCAAGCACATCGCCGTGTTCCCCTGCAAGCTCCGAATCCTGCCTCAGTTCATCTTCAACTCCAGGGACCCCATAGTGATGGGGGTGACAGTGGAGGCCGGGGTGATTCGGCAGGGCACCCCGCTCTGTGTGCCAAGCAAAGGATTTGTCGATATTGGGATTGTCACCAGTATTGAAGTAAACCACAAGTCAGTGGAGAGTGCCAAGAAGGGTCAGGAGATCTGTATCACCCGGCAGTCCATCGACGCTCTGAAAGACTGGTTCAGGGACGAGATGCAGAAGTCGGACTGGCAGCTGATCATGGAGCTGAAGAAGACCTTCGAGATCATCTGAGGGCCGGCGGGAGCGCGGGCTCCGTGACGCAGCGCCGGGCCCGGCACACATTCACCTGGGAGCAGGGGGCATGGCAATCGaggaaaaaggaaatgttttctgtGAGAAACCAAACTATTTCCACTGTTTTGACAGTGACTGTTTTACAACGTACACACAATTCCAGCGtgcctcttttttttgtttttgttttttttcttccttaagTGGCTGCCGTTTTAtggtccccccccccccccctattaACGTGGACTGCTGAATGGAGAGTGTGATACAGCGGGGTGGAGTTAACTTTTCATAGTCAGAAATGACCTATTCAGTGTTTTGGACTGTGAAGCTTTTGGTATGCAGTTATCTTTTTACAGTTCtgatgtggatttttttttttttttttaattaaatctgaaaactcctcccctttctctccccccatTCTGCCTAGTGCCTATAGCATTTTTATAGAGGACTACATAGGTGACAAAGGCAATCCCCCTACTtgatatttttgaaatgtaaaagtacGAGACCGCACCCCATTTCTAGAAATTGCACATCTCTGCAGCCTTTTATTGCTTGTACAGTTGTTGGTGAAGGAAAACCGCTCCAGACTGTATttactgaaatggaaaataaagagcAAACTTACCCCATGTGATTCCTTACCACACCATCCCTCTGATTCATCAAGCTTACATGTTTTTTGGAACAACAGAATGACATCTTGCAATTAATTCAAGCCGTGTTGCATAACACTGGAACCCCGtctattaaaatgattttataatgTTCTAATGCTCTTGTTTCG

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K03243 EIF5B; translation initiation factor 5B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90655 lncRNA downstream 53455 29560538 ~ 29562066 (-) True G72535
TU90604 lncRNA downstream 192149 29421260 ~ 29423372 (-) True G72495
TU90580 lncRNA downstream 217216 29395486 ~ 29398305 (-) False G72477
TU90574 lncRNA downstream 263867 29350078 ~ 29351654 (-) True G72472
TU90530 lncRNA downstream 397488 29217780 ~ 29218033 (-) True G72438
TU90650 lncRNA upstream 3885 29647588 ~ 29649642 (-) True G72530
TU90712 lncRNA upstream 95504 29739207 ~ 29743212 (-) True G72581
TU90767 lncRNA upstream 303014 29946717 ~ 29947061 (-) True G72629
TU90785 lncRNA upstream 324952 29968655 ~ 29982575 (-) True G72642
TU90789 lncRNA upstream 410637 30054340 ~ 30055173 (-) True G72646
AMCG00014744 mRNA downstream 108460 29490065 ~ 29507061 (-) True AMCG00014744
AMCG00014742 mRNA downstream 151645 29454042 ~ 29463876 (-) True AMCG00014742
AMCG00014735 mRNA downstream 232073 29351748 ~ 29383448 (-) True AMCG00014735
AMCG00014732 mRNA downstream 583613 29023778 ~ 29031908 (-) True AMCG00014732
AMCG00014731 mRNA downstream 602466 28995936 ~ 29013055 (-) True AMCG00014731
AMCG00014750 mRNA upstream 6735 29650438 ~ 29651309 (-) True AMCG00014750
AMCG00014749 mRNA upstream 14570 29658273 ~ 29659385 (-) True AMCG00014749
AMCG00014756 mRNA upstream 191548 29835251 ~ 29841157 (-) True AMCG00014756
AMCG00014755 mRNA upstream 199721 29843424 ~ 29852958 (-) True AMCG00014755
AMCG00014759 mRNA upstream 271552 29915255 ~ 29940883 (-) True AMCG00014759
TU90581 other downstream 217216 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 1283039 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 17953028 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 18817374 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 20298354 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 2619464 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 2953759 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 2953759 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 3158155 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 5125880 34769583 ~ 34769979 (-) True G73328

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU313463 True 1008 lncRNA 0.47 3 NC_053135.1 14203 ~ 15306 (+)