RNA id: TU90789


Basic Information

Item Value
RNA id TU90789
length 814
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G72646
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30054340 ~ 30055173 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttatagtatcaccttatcacgaatcctggaatcttgtagaactcaatttctgtaataattggatgcagacaccaattccaaagatataaattgtcaaatttattcaaaaacaaagactaaatgtagcactacactaattatacaaaagggaaaaactaatttaaattcaactctagatcaacaaatcaaagacagttcacttccgtgaccaaatcaaagaccatgggatcgcatatgataacacacaaatcgttaaacaaaaaaggttataaacacattgactacaatactggttagtaagacgaaggtgagtctctcatttagtattgttagtcagacattaaataactatgcaggttagtatttatgtcaggtaacttctcgttatatatatatatatatcagtctcatttacgtttaggtgccgagaaagatcctatcattacttgttaccacaatttcccttaactgattattattcaatgattaatgattaaggataggcagtgCCATCTATAATCTGgtgtctattaacttgtgtcaatttcagactaaacagttaaacaggaatgagaagatatttctcggtgttgacagattttatttctaaaattatcaacaaaacagtttaatgcaacacacatttatatttaagaaaactaaatgatattacacattctagagttatgaatcacagattaacatttctaattgatttctcaaatgtcatgaatcatgaactccaaactgttaaacttatctgaacttcgttgcagagaggcctctctgtcttcgggctcagataacagcatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90785 lncRNA downstream 71765 29968655 ~ 29982575 (-) True G72642
TU90767 lncRNA downstream 107279 29946717 ~ 29947061 (-) True G72629
TU90712 lncRNA downstream 311128 29739207 ~ 29743212 (-) True G72581
TU90650 lncRNA downstream 404698 29647588 ~ 29649642 (-) True G72530
TU90655 lncRNA downstream 492274 29560538 ~ 29562066 (-) True G72535
TU90803 lncRNA upstream 111544 30166717 ~ 30166926 (-) True G72659
TU90829 lncRNA upstream 155969 30211142 ~ 30211396 (-) True G72680
TU90837 lncRNA upstream 206164 30261337 ~ 30261604 (-) True G72685
TU90845 lncRNA upstream 339966 30395139 ~ 30395338 (-) True G72693
TU90943 lncRNA upstream 786350 30841523 ~ 30844128 (-) False AMCG00014775
AMCG00014758 mRNA downstream 103035 29950031 ~ 29951305 (-) True AMCG00014758
AMCG00014759 mRNA downstream 113457 29915255 ~ 29940883 (-) True AMCG00014759
AMCG00014755 mRNA downstream 201382 29843424 ~ 29852958 (-) True AMCG00014755
AMCG00014756 mRNA downstream 213183 29835251 ~ 29841157 (-) True AMCG00014756
AMCG00014749 mRNA downstream 394955 29658273 ~ 29659385 (-) True AMCG00014749
AMCG00014762 mRNA upstream 156965 30212138 ~ 30217061 (-) True AMCG00014762
AMCG00014763 mRNA upstream 565332 30620505 ~ 30627347 (-) True AMCG00014763
AMCG00014764 mRNA upstream 575263 30630436 ~ 30646339 (-) True AMCG00014764
AMCG00014765 mRNA upstream 613353 30668526 ~ 30689037 (-) True AMCG00014765
AMCG00014766 mRNA upstream 633869 30689042 ~ 30695325 (-) True AMCG00014766
TU90581 other downstream 656035 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 1721858 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 18391847 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 19256193 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 20737173 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 2207994 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 2542289 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 2542289 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 2746685 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 4714410 34769583 ~ 34769979 (-) True G73328

Expression Profile