RNA id: AMCG00014765


Basic Information

Item Value
RNA id AMCG00014765
length 1596
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00014765
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30668526 ~ 30689037 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGAAAGACCAGATCAGACAGCTGGAAGAGCCAGCCATTAAGAAGCTAAAAGATACCTTTATTGAAACCATAAAAATCGACAAAGAGGCCACAGCGGAGTCTATGCTAAGGACCCAGTTTAAGATGGAGATGGTAGTGTACACACAAGATAGCATCTACAGCACCCATCTGTATGAAGTCAAAGAAGATGAGGAAGAAAACACACCAGGAAAGTTGATTGCCTCTAAGCGCCTAGCAGACCAGATCCCCCTTGTCATTCAATACTTAACTCTTCAGGAATCAGCAGATCAGCTTCACAGAGAGATGTTCCAGCTGCTTCAGGACAAGAACAGCTTGGATAACATCCTAAAAGAAGATTCAGAGATTGGAGCTGCAGGTACAGTTCCTGCTGTGCTAAATGACATGCAGGAGAACACTACTCTGAATGCACAATATGAGGAGAAGGTGCGGCCCTGCATTGATCTCATCGACTCTCTGCGGTCCCTGGGGGTGGAGAAGGATCTGGCTCTGCCTGCCATTGCTGTGATTGGAGACCAGAGCTCTGGGAAGAGTTCAGTGCTGGAGGCGCTGTCTGGAGTGTCCCTGCCCAGGGGGGCTGgGATTGTGACCCGCTGTCCCTTGGTACTGAAACTCAAGAAAGTGAAAGTGGGAAAGCCATGGGAGGGAAGACTTCTTTATAAAGATAATGAAGTAAAACTGGGAAGCACAGCAGAAGTGGAGGAGGAAATCCGTAGAGCCCAAGACATTATAGCTGGCAAAGGTGAAGGAATCAGTGAAGAAATGATCAACCTAGAGATCAAGTCCAGTGAAGTCCCTGATCTGACCCTCATTGACCTCCCAGGGATTGCTCGAGTAGCCGTTGGCAACCAGCCCAAAGACATTGGGGAGCAGATTAAACGAATGATCCGCAAGCAAATAGATAAACAAGAGACCATTAGTTTAGTGGTGGTGCCATGCAATGTTGACATTGCCACCACAGAGGCTTTGAAGATGGCCAAGGAGGTTGACCCTTCAGGAGAGAGGACACTGGggATCCTGACAAAGCCAGACCTGGTGGACGAGGGCACTGAAGTGAAGATTGTGGCTGTCATGCGCAATTTAGTCATCCCTCTGAAGAAGGGTTATATGATTGTGAAGTGCCGTGGCCAGAAGGACATCAATGCAAATCAGACACTGGCTGAAGCTATCAAGAAGGAAAAGGCTTTCTTTGAGGATCACCTTCATTTCAGGCAAGGATATAGTGAATGTAAATCTCTCCCTCATCTGGAAAATCAGATTGAAGAGAAACTTCAGACGACGGTCAGGGAACTTAAGAAGTATGGAGAGGCAATACCAAGGTCTGATAAAGAGAAGTTGACCTTCCTGATTGAAACAGAAGGCCTCAAACACCTGCACCGAACCACTTGCTCCTTACTGTTGGAGTTTCTGAACCTGTCTATTCCTGACAAGCTGGAGGTTATCCAAGGAGGTCAGTCTGACATTAAGACAGCTGTGCAGGATTTGCTGAATTTCATGGAGAAACGGAGCCAGCAGCAGCCAGAGGAGGCAAAGCTCTTGCCGTTGCCCCGCTTCCAGCctgaaggagaagaggaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14754 MX; interferon-induced GTP-binding protein Mx

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90845 lncRNA downstream 273188 30395139 ~ 30395338 (-) True G72693
TU90837 lncRNA downstream 406922 30261337 ~ 30261604 (-) True G72685
TU90829 lncRNA downstream 457130 30211142 ~ 30211396 (-) True G72680
TU90803 lncRNA downstream 501600 30166717 ~ 30166926 (-) True G72659
TU90789 lncRNA downstream 613353 30054340 ~ 30055173 (-) True G72646
TU90943 lncRNA upstream 152486 30841523 ~ 30844128 (-) False AMCG00014775
TU90944 lncRNA upstream 152486 30841523 ~ 30844948 (-) True AMCG00014775
TU90970 lncRNA upstream 257053 30946090 ~ 30947343 (-) True G72790
TU90971 lncRNA upstream 261073 30950110 ~ 30951375 (-) True G72791
TU91053 lncRNA upstream 773142 31462179 ~ 31463783 (-) True G72862
AMCG00014764 mRNA downstream 22187 30630436 ~ 30646339 (-) True AMCG00014764
AMCG00014763 mRNA downstream 41179 30620505 ~ 30627347 (-) True AMCG00014763
AMCG00014762 mRNA downstream 451465 30212138 ~ 30217061 (-) True AMCG00014762
AMCG00014758 mRNA downstream 717221 29950031 ~ 29951305 (-) True AMCG00014758
AMCG00014759 mRNA downstream 727643 29915255 ~ 29940883 (-) True AMCG00014759
AMCG00014766 mRNA upstream 5 30689042 ~ 30695325 (-) True AMCG00014766
AMCG00014780 mRNA upstream 70120 30759157 ~ 30763061 (-) True AMCG00014780
AMCG00014775 mRNA upstream 153005 30842042 ~ 30846800 (-) False AMCG00014775
AMCG00014782 mRNA upstream 233318 30922355 ~ 30925207 (-) True AMCG00014782
AMCG00014785 mRNA upstream 263434 30952471 ~ 30979877 (-) True AMCG00014785
TU90581 other downstream 1270221 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 2336044 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 19006033 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 19870379 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 21351359 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 1574130 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 1908425 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 1908425 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 2112821 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 4080546 34769583 ~ 34769979 (-) True G73328

Expression Profile