RNA id: TU90845


Basic Information

Item Value
RNA id TU90845
length 200
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G72693
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30395139 ~ 30395338 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctggaacagaggagactacgtggggacttgattcaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatggaaattgggtttcaaggcattcaaaatggaaaacaggagacacttcttcacacagagagtcgtcaccatctggaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90837 lncRNA downstream 133535 30261337 ~ 30261604 (-) True G72685
TU90829 lncRNA downstream 183743 30211142 ~ 30211396 (-) True G72680
TU90803 lncRNA downstream 228213 30166717 ~ 30166926 (-) True G72659
TU90789 lncRNA downstream 339966 30054340 ~ 30055173 (-) True G72646
TU90785 lncRNA downstream 412564 29968655 ~ 29982575 (-) True G72642
TU90943 lncRNA upstream 446185 30841523 ~ 30844128 (-) False AMCG00014775
TU90944 lncRNA upstream 446185 30841523 ~ 30844948 (-) True AMCG00014775
TU90970 lncRNA upstream 550752 30946090 ~ 30947343 (-) True G72790
TU90971 lncRNA upstream 554772 30950110 ~ 30951375 (-) True G72791
TU91053 lncRNA upstream 1066841 31462179 ~ 31463783 (-) True G72862
AMCG00014762 mRNA downstream 178078 30212138 ~ 30217061 (-) True AMCG00014762
AMCG00014758 mRNA downstream 443834 29950031 ~ 29951305 (-) True AMCG00014758
AMCG00014759 mRNA downstream 454256 29915255 ~ 29940883 (-) True AMCG00014759
AMCG00014755 mRNA downstream 542181 29843424 ~ 29852958 (-) True AMCG00014755
AMCG00014756 mRNA downstream 553982 29835251 ~ 29841157 (-) True AMCG00014756
AMCG00014763 mRNA upstream 225167 30620505 ~ 30627347 (-) True AMCG00014763
AMCG00014764 mRNA upstream 235098 30630436 ~ 30646339 (-) True AMCG00014764
AMCG00014765 mRNA upstream 273188 30668526 ~ 30689037 (-) True AMCG00014765
AMCG00014766 mRNA upstream 293704 30689042 ~ 30695325 (-) True AMCG00014766
AMCG00014780 mRNA upstream 363819 30759157 ~ 30763061 (-) True AMCG00014780
TU90581 other downstream 996834 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 2062657 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 18732646 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 19596992 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 21077972 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 1867829 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 2202124 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 2202124 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 2406520 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 4374245 34769583 ~ 34769979 (-) True G73328

Expression Profile