RNA id: TU90970


Basic Information

Item Value
RNA id TU90970
length 1188
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G72790
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30946090 ~ 30947343 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCAGTaaggaaattaatgttttttgtgtatgtgtatgacacttaaaaaagaaaatcaaaaagaCAGCTTtttatggttattttatttgtttcttgttaaatGTTCTCCCATGTAGTTTCACTCAGGGTGCCATTTTCTGACTGGCTTCAAACAGACTGCCACCGTATCCACAAGCCGGCACAGTGATCTCACAGTGACCTTGGTGCAACACTATACTTCCTTACTGAGGTTTGCTTGGCTAATCTCATTATAGGGTCACCATGCTCGATTTCATGCCGATTTCCATTCAGTTGGACTCAATGGATATGTAAAACATAGATAAACGGCAGAAgaccaggaaaaacaaaacgaagCAAGGAAGGTGCAATGGATGCACTAGATTCATACAGTTCTCTTTCCTGAGCACTACTGCTCTTTAAATGTCCAAATCTAATTAGCCTGGTTGGCAAGTTGTTGAGTTGTGGTCCCCAAAAAAGCTGACTCACTCACTTTTTAGTTTCTATAGAATAGCCTGTTGCAAAGATTGAATTGAATCACCTTGTTGATTTTTGGACTGAGTTTGGTTTCACTGTCAGTGCTCAGTACCTCATCTATTGAAAGCTTTAGAATAATTGTCAGTTTGATGTGAAAGAGAACTAGTCTtcacttttgaaaaaaacattaattgcaTTGCTTGTCATTTGCTTTTCCACCATTTGAGCTGCAGAGAACCAAATTATCTTGATTTTCAAGAGCTTTTATAGCCTGATGTGTTACGGCATGAAAGTGTTTTAGCTTCTAAAGCACTACTCAAATGGCCCAACCTTTAATCCTGGGAGAAACGCTGAGAATTGTTGATGAAACTGAAGCATGACTCACTGTGAGATCACGCTGCTGGATCATGCCGAATTGTCATCaTTTGTTTGATTTGCACATTGTGTCAGTTCTAGTGTGTTAAAAAGATTGCTATTCAgatgtctctttctttctctctctcgttgtCTCTTTCTCCTGGAATCTATGCAACTAGATGTCTTCACATTGTATTTCGCTCATGCTGGCATCAAATGGTGCATTTGTGTAatctgtatatactgtatacaaaagcaaaagaaaaatgcgacaaacacacacttccatacacacacacacgcacgcacacacacacacacacacacacacacagaaaatgaatgttgctagaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90944 lncRNA downstream 101142 30841523 ~ 30844948 (-) True AMCG00014775
TU90943 lncRNA downstream 101962 30841523 ~ 30844128 (-) False AMCG00014775
TU90845 lncRNA downstream 550752 30395139 ~ 30395338 (-) True G72693
TU90837 lncRNA downstream 684486 30261337 ~ 30261604 (-) True G72685
TU90829 lncRNA downstream 734694 30211142 ~ 30211396 (-) True G72680
TU90971 lncRNA upstream 2767 30950110 ~ 30951375 (-) True G72791
TU91053 lncRNA upstream 514836 31462179 ~ 31463783 (-) True G72862
TU91063 lncRNA upstream 519149 31466492 ~ 31467056 (-) True G72868
TU91062 lncRNA upstream 533505 31480848 ~ 31485466 (-) True G72867
TU91073 lncRNA upstream 568087 31515430 ~ 31519849 (-) True G72874
AMCG00014782 mRNA downstream 20883 30922355 ~ 30925207 (-) True AMCG00014782
AMCG00014775 mRNA downstream 99290 30842042 ~ 30846800 (-) False AMCG00014775
AMCG00014780 mRNA downstream 183029 30759157 ~ 30763061 (-) True AMCG00014780
AMCG00014766 mRNA downstream 250765 30689042 ~ 30695325 (-) True AMCG00014766
AMCG00014765 mRNA downstream 257053 30668526 ~ 30689037 (-) True AMCG00014765
AMCG00014785 mRNA upstream 5128 30952471 ~ 30979877 (-) True AMCG00014785
AMCG00014791 mRNA upstream 314373 31261716 ~ 31279130 (-) True AMCG00014791
AMCG00014790 mRNA upstream 331971 31279314 ~ 31292735 (-) True AMCG00014790
AMCG00014789 mRNA upstream 389770 31337113 ~ 31345430 (-) True AMCG00014789
AMCG00014796 mRNA upstream 522216 31469559 ~ 31471622 (-) True AMCG00014796
TU90581 other downstream 1547785 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 2613608 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 19283597 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 20147943 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 21628923 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 1315824 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 1650119 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 1650119 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 1854515 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 3822240 34769583 ~ 34769979 (-) True G73328

Expression Profile