RNA id: AMCG00014782


Basic Information

Item Value
RNA id AMCG00014782
length 2325
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00014782
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30922355 ~ 30925207 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATGCCAACACGCAGGAAGATGATCTTCCCAGCTGGGCACCCCAAGGGTTGCTGGAGCTGGAAAGGTGTCGGCAGGATCTGCAGAGCCTGAAGGACCAGCAGATCCAGGAGCTGGAGACTGCGTCCAGGTCTTTTGAATGCGCCTTGTTGGGAGCACAGAGGGAGGAACGAAGACTAATGGACAGGGTGGAGCAGGAACACCAGGAAGTCCGGCGTCTCTTGGAGCAACTGCAGAGGGACAACGTGGCCAGAGTGCAGGCTATGCAGAACACGATTGACGAGAGGATCTTGAATCTGACGCAGCTGAGAGACCGTATGCAGCAAGGGGGCCAGAAGAGCCTGGGCCAGGATCTCCAGCAGAAGCTCTCCGAGCTGCTGCCCAGGGAGCTCACTCTGTCCCTGAAACGGGTCAGCTTCCAGCCCAATCCCAATCTCCCTAGCCTTTTCGGGAAGATTAGGGTCCAAGAGCAGAGCCTGCGTTTCTCAGTTTCTTGTGGAGGGCAGAGCAGGGGTGCTTGTGTTTCCTCCATGGGGGTGAACCAGACCCAGTATAGGAATGGAAATGCAGGAGAGGCTGCAGATAGCCAAGTCACCAGACACATGCCTGAGAAACCAGTTACAAGCAGTGGGAGTGTAAGGGTAGTAAGGAAGATCCGGATCTCACCTAGAGCCGAGGAGACAGGTGATGAAAAGGGGTCCCCGAGAACCGAATCTACTTTAGTTAAAGAAGCTCAGGTGAATGATACTTACCGTGATGGTGACATAACGAACAAACCAGGGTTGTCTAGCAGCCCACAGCTCCCCAGGGTTCCTGCAATAGACCTGTCCACTCTGTCTGACCCTAATACACATATTCTTGGGGTAGGGGGTGACAACGATGAGGATCTGGGGCTCTTTCAAGCCGTTCCTGCATTCCTGAGTGATGGGGAGTCTGAGAACGGGGAAGAGGAGGTGGCGGTTGAAAACAGCATGGAGAGGAACCATGTCAGAGACAGCCCTGTGTCCAGTAGAGCTCTGATTCTGTTGTCCAGCCGCCGACCTTCTGCCCGTCATGAAGGAGGGCTGGAGAGGACGACTGGAGTCCGAGATTCTGCATTTACCCAGAGCTGCCTTGATCTGTCCCCAAGTAACAAGCCCCCTTCTCGTACTGACCTGTCTCCAGAGGAGACTAATGCTGGGGTGCCAGGAGAGATATGGAGACCGGCTTCACCAGCAGACAGCATCGACTCATCCTACACATTCATTGTCAACTCTCCCAGGGATTACAGTATCACTCTTCGCCGGGCTGGTGTTGACCCACGCCTTTCAAAGTCCACAGTAGATTTGTCCAGAAAGGGGAATGGAAGGCTGAAATTGAAGACCTTCCGATCAGCCAGAGAGCAGAAGCAAGGGGGTagaggagaggcagagagggaggctAAAACAGACCAGGCAGAACTAGCAATCCAGGAAGAAGATGGAGAAAGGCAGGATCAAGTGCGTCTGATTAGTAAGTTTGGAAAGTTTGGCTCAGGGCGTGCAGAGCTTAGTCTTCCAAGCGGGGTCCACGCCATGCCACAGGGCCAGCTGTACGTGGTGGATTGTGGGAATGCCAGAGTGCAGGTGACAGACACCCGGGGCAACATCCTGCAGCAGGTGTCCTTCCAGGGTCACGAGGGCGCTGCAGGCCGTCGCTGCCGTAACTACTTTGACGTGGCTGTAAATGGGAAGGGACTGATAGCATTGAGCTGTGCAGCAGAGAAAGCCCTGCTAATATTTAGCAGACACGGGCGCCGACTTCAGGcatttgggggagggggagacgAGTTGGAAGCCCCGAGGGGAGTGGCAGTCAATTACCACGATGAGTTCTTGGTTGCTGACACTCGTCGTGGGACTCTGACTGCTTTTAAACTAGATCCCAAATCTGGCAGTAAGCTAGAGCGCACTGTAGTGCCCGGCTTCTGTAAGCCCTATCTAGTCGCAACTGGTCTGGCCACAGGACTGGTTGCCGTCTCAGAGAGGGGGAGTGAGACAGGGGGAGCACCCTGCGTTAAGGTCCTAGGCCCCAACTGGAACACCCTGAGGATCCTGGGCATTGACACCAGACTGGGCCCAGTACTGTCCTGCCCCTGGGGAGTGTGTATCGACAGGGATGGTGATGTACTTGTTGCAGACTGGGGTAAAGAACATAGAGTGCTCCTGTATTCTGCCCAGGGCTCGGGGAGGCCTGTTGTGACACAGGGGTTGAACAGCCCCAGAGGTCTGACTCTCCTGCCAGAGGGACATCTAGTGGTGGCAGACAGCATGCAcaactgcattaaaatattcCAGTACAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90944 lncRNA downstream 77407 30841523 ~ 30844948 (-) True AMCG00014775
TU90943 lncRNA downstream 78227 30841523 ~ 30844128 (-) False AMCG00014775
TU90845 lncRNA downstream 527017 30395139 ~ 30395338 (-) True G72693
TU90837 lncRNA downstream 660751 30261337 ~ 30261604 (-) True G72685
TU90829 lncRNA downstream 710959 30211142 ~ 30211396 (-) True G72680
TU90970 lncRNA upstream 20883 30946090 ~ 30947343 (-) True G72790
TU90971 lncRNA upstream 24903 30950110 ~ 30951375 (-) True G72791
TU91053 lncRNA upstream 536972 31462179 ~ 31463783 (-) True G72862
TU91063 lncRNA upstream 541285 31466492 ~ 31467056 (-) True G72868
TU91062 lncRNA upstream 555641 31480848 ~ 31485466 (-) True G72867
AMCG00014775 mRNA downstream 75555 30842042 ~ 30846800 (-) False AMCG00014775
AMCG00014780 mRNA downstream 159294 30759157 ~ 30763061 (-) True AMCG00014780
AMCG00014766 mRNA downstream 227030 30689042 ~ 30695325 (-) True AMCG00014766
AMCG00014765 mRNA downstream 233318 30668526 ~ 30689037 (-) True AMCG00014765
AMCG00014764 mRNA downstream 276016 30630436 ~ 30646339 (-) True AMCG00014764
AMCG00014785 mRNA upstream 27264 30952471 ~ 30979877 (-) True AMCG00014785
AMCG00014791 mRNA upstream 336509 31261716 ~ 31279130 (-) True AMCG00014791
AMCG00014790 mRNA upstream 354107 31279314 ~ 31292735 (-) True AMCG00014790
AMCG00014789 mRNA upstream 411906 31337113 ~ 31345430 (-) True AMCG00014789
AMCG00014796 mRNA upstream 544352 31469559 ~ 31471622 (-) True AMCG00014796
TU90581 other downstream 1524050 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 2589873 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 19259862 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 20124208 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 21605188 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 1337960 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 1672255 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 1672255 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 1876651 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 3844376 34769583 ~ 34769979 (-) True G73328

Expression Profile