RNA id: AMCG00014796


Basic Information

Item Value
RNA id AMCG00014796
length 2064
RNA type mRNA
GC content 0.50
exon number 1
gene id AMCG00014796
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31469559 ~ 31471622 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGAAATCTAACAGAAGCACAGTGAGTGGGTACTTCCTGGCTGGACGCTCAATGACTTGGGCTGTGATTGGGGCATCATTGTTTGTCAGTAACATTGGCAGCGAACATTTCATTGGACTTGCTGGATCTGGAGCCGCAAGTGGATTTGCTGTAGGAGCCTGGGAGTTTAATGCGCTTTTGCTCCTGCAGTTTTTAGGGTGGGTCTTCATCCCCGTCTACATCCTCTCAGGGGTCTACACTATGCCGGAGTACCTTTGCAAGCGCTACGGAGGCAAGCGGATTAAGGTTTATTTCGCCTCGCTCTCTTTGTTACTCTACATTTTCACTAAACTGTCCGTCGACCTGTACGCTGGGGCACTGTTTATTCAGGAGTCTTTGGGATGGAACCTTTACTTGTCTGTGATTTTGCTGATTTGCATGACCGCCTTGCTGACGATCACCGGGGGACTTGTTGCCGTGATTTACACCGATACACTCCAAGCTTTCCTGATGATTTCTGGTGCCTTCATACTTATGGTGATCAGCCTGGTTGAAGTGGGAGGCTTGGAGGGTGTTCGGGAGAAGTACATGCAGGCCACCCCCAATGTTACAgaaattcaaatacaatataaccTGACCTATACCAACAGCTGTCGTATCCACCCAAAGCCCCATTCCCTTAAACTTCTGCGAGATCCCATGGATGAAGACATCCCCTGGCCTGGCTTTCTTCTGGGTCAAACTCCAGCATCCATTTGGTACTGGTGTGCAGACCAAGTTATCGTCCAGAGAGTGCTGGCTGCTAAGAACATCATGCATGCCAAAGGAGCGACGTTAATGGCTGGCTTCCTCAAAATTCTTCCCATGTTCATCATCGTGATTCCAGGAATGATTTCGCGAATCCTCTATGCAGACGAGCTGGTCTGTATCAGTCCAGAGCACTGCCTGCAGGTGTGCGGTAGTAAAGCAGGCTGCTCCAATATTGCCTATCCTCGCCTGGTGATGAACATCCTTCCGGTTGGCCTGCGAGGGCTGATGATGGCAGTTATGATTGCTGCTCTCATGAGTGACCTGGACTCCATCTTCAACAGTGCCAGCACCATTTTCACTCTGGACATTTACAAGATGATCAGGAAGTATGCTTCTTCCAAGGAGCTGATGATTGTTGGGAGGCTCTTTGTGTTGTTCATGGTGGCTATCAGCATCGCCTGGGTTCCTGTCATCATTGAGATGCAAGGTGGCCAGATGTACCTGTACATTCAGGAGGTCGCAGACTACCTAACCCCACCTGTCGCTGCTGTCTTCCTGCTGGGGATCTTCTGGAAGCGTTGCAATGAGACTGGTGCATTCTATGGAGCCATGGTGGGCTTTGTGTTGGGTGCCACCCGCCTGATCCTGGCCTTTGTCTACCGTGAACCCCCCTGCAACCAGCCGGACAACAGACCCTCCTTCATCAAGGACATCCACTACATGTATGTAGCGGCAGGGTTGTTCTGGATCACTGGAACACTGGCAGTGGTGATCAGTCTTTGTACTCCGCCTCCTTCAAAGGAGCAGATCCGCAATACCACCATCTGGGGTATCCATCACAAGGAGCTGCAGGAGGCTCATCTCAAGGAAGAGGCCTACAAGCTGACCAGCAAAACCCTCATCGACTGCAATGGCAGCTGTGACCACAAGGAGTTACCCCCAGACCTACTGAAAGAGAAGCTTGGCGACAGGGTTGACGTCAAATTACTGGTTGGATCGGACTCTTCCACCTCTGACTGCACGATGTTGGGTCCTTCAGAAGCTCAGACGCCAATTGAACATTACAGCAATGGCCAGGCCACCTTGGTGGGTGAGCACAGCcctgatgatgatgacgataaACATCACAGCAAGGTCAGGAAGACAATAGACTGGTTCTGTGGTTTCAAGGGTCAGTCTGCTCAGAGACCAGAAACCAGAAATGCAGAGGAGTCTGAGGCACTGATCCTGGCAATGCTTTATGAGACTccaaaaattaaaatcttactGAACACAGGTCTGGTTGTAGTGTGCTCTGTGGGAATCTTTATGTTCGTTTATTTCTCTTTGTAG

Function

GO: NA

KEGG:

id description
K14383 SLC5A3, SMIT; solute carrier family 5 (sodium/myo-inositol cotransporter), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91063 lncRNA downstream 2503 31466492 ~ 31467056 (-) True G72868
TU91053 lncRNA downstream 5776 31462179 ~ 31463783 (-) True G72862
TU90971 lncRNA downstream 518184 30950110 ~ 30951375 (-) True G72791
TU90970 lncRNA downstream 522216 30946090 ~ 30947343 (-) True G72790
TU90944 lncRNA downstream 624611 30841523 ~ 30844948 (-) True AMCG00014775
TU91062 lncRNA upstream 9226 31480848 ~ 31485466 (-) True G72867
TU91073 lncRNA upstream 43808 31515430 ~ 31519849 (-) True G72874
TU91074 lncRNA upstream 43808 31515430 ~ 31519932 (-) False G72874
TU91136 lncRNA upstream 226033 31697655 ~ 31698012 (-) True G72919
TU91232 lncRNA upstream 425318 31896940 ~ 31898945 (-) True G73005
AMCG00014789 mRNA downstream 124129 31337113 ~ 31345430 (-) True AMCG00014789
AMCG00014790 mRNA downstream 176824 31279314 ~ 31292735 (-) True AMCG00014790
AMCG00014791 mRNA downstream 190429 31261716 ~ 31279130 (-) True AMCG00014791
AMCG00014785 mRNA downstream 489682 30952471 ~ 30979877 (-) True AMCG00014785
AMCG00014782 mRNA downstream 544352 30922355 ~ 30925207 (-) True AMCG00014782
AMCG00014794 mRNA upstream 57375 31528997 ~ 31578588 (-) True AMCG00014794
AMCG00014795 mRNA upstream 122769 31594391 ~ 31620377 (-) True AMCG00014795
AMCG00014797 mRNA upstream 229005 31700627 ~ 31707522 (-) True AMCG00014797
AMCG00014806 mRNA upstream 297951 31769573 ~ 31789737 (-) True AMCG00014806
AMCG00014809 mRNA upstream 495822 31967444 ~ 31969223 (-) True AMCG00014809
TU90581 other downstream 2071254 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 3137077 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 19807066 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 20671412 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 22152392 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 791545 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 1125840 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 1125840 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 1330236 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 3297961 34769583 ~ 34769979 (-) True G73328

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000081 True 2016 mRNA 0.48 1 NC_007112.7 2025085 ~ 2027100 (+)