RNA id: TU91282


Basic Information

Item Value
RNA id TU91282
length 621
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G73046
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32256155 ~ 32256775 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttccaacaCCACAGCCCTGGGAAGTGGTTCTGTACCAAATTCAATGGAGTTACACATGACAGTTTTACACTAGAGGGGGAGGGAGAtaaagaaagctttttttttattattattattttttttttttaacttttttttttatttattattttttaacaaaattcTGGATACCCTCTTTAATCCAGATCTACTCCCACAGCAAAACATACTTGGGATAACCTTGAGTAATGATACACagcaagtttaaaaacaaaacaaaacaaaacaaaaaactaataataacaacaataataagtcATACTCCTGGGCTGTTGCCACAAGGTAAAACAGTAAAAGTCAAAATCTGCAGTAAGGGATGACCTGACTGCTGGAAACATGAGGCATGTTGTCCGATATCCCCTAACCCCCTTCCCCCtcgatttttttaatttgttttaacaaaaacCCAAAAAATGGTATTTCAAGAACCAGATGAGACACTGTATATCAGAAGAATCAATGGTTTCTACTTAACTTTgtccatagttttttttttctcttgataataaaaaaggagagtgagagagagggaaaaaaacactatttcTTATAGTTAAACCATGtttgtgcttattttttaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91232 lncRNA downstream 357210 31896940 ~ 31898945 (-) True G73005
TU91136 lncRNA downstream 558143 31697655 ~ 31698012 (-) True G72919
TU91074 lncRNA downstream 736223 31515430 ~ 31519932 (-) False G72874
TU91073 lncRNA downstream 736306 31515430 ~ 31519849 (-) True G72874
TU91062 lncRNA downstream 770689 31480848 ~ 31485466 (-) True G72867
TU91285 lncRNA upstream 8357 32265132 ~ 32265424 (-) True G73049
TU91304 lncRNA upstream 100927 32357702 ~ 32362393 (-) True G73066
TU91322 lncRNA upstream 173822 32430597 ~ 32430951 (-) True G73082
TU91351 lncRNA upstream 193647 32450422 ~ 32466416 (-) True G73106
TU91353 lncRNA upstream 198531 32455306 ~ 32555945 (-) False AMCG00014816
AMCG00014809 mRNA downstream 286932 31967444 ~ 31969223 (-) True AMCG00014809
AMCG00014806 mRNA downstream 466418 31769573 ~ 31789737 (-) True AMCG00014806
AMCG00014797 mRNA downstream 548633 31700627 ~ 31707522 (-) True AMCG00014797
AMCG00014795 mRNA downstream 635778 31594391 ~ 31620377 (-) True AMCG00014795
AMCG00014794 mRNA downstream 677567 31528997 ~ 31578588 (-) True AMCG00014794
AMCG00014813 mRNA upstream 13910 32270685 ~ 32285936 (-) True AMCG00014813
AMCG00014814 mRNA upstream 65199 32321974 ~ 32322759 (-) True AMCG00014814
AMCG00014816 mRNA upstream 245542 32502317 ~ 32555533 (-) True AMCG00014816
AMCG00014820 mRNA upstream 372057 32628832 ~ 32641932 (-) True AMCG00014820
AMCG00014819 mRNA upstream 390759 32647534 ~ 32648995 (-) True AMCG00014819
TU90581 other downstream 2857850 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 3923673 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 20593662 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 21458008 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 22938988 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 6392 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 340687 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 340687 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 545083 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 2512808 34769583 ~ 34769979 (-) True G73328

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001034 False 7232 mRNA 0.49 10 NC_007112.7 47335038 ~ 47411186 (+)
grasscarp (Ctenopharyngodon idella) TU7913 True 507 lncRNA 0.33 1 CI01000000 11273676 ~ 11274182 (+)
tiger barb (Puntius tetrazona) TU7913 False 2510 lncRNA 0.55 2 NC_056699.1 23018238 ~ 23020831 (-)