RNA id: TU92162


Basic Information

Item Value
RNA id TU92162
length 1466
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G73791
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37160988 ~ 37163326 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAAGAGGAAGTGGGGTGACTGACTAACACTATGGACAGTGTAGGAAGTCAGGGAAAAAACAGACTTGGTTGACAAAAGAAAGATCTGATATGAACCAATGGGACATACTGGTCCCTGTCAAGCGGTGATTGGATTGAATGGGGGGTTGTCCTGCCCCCTGCACTATAATTGCCCTCTGAGGAGATCGGAATCGGAAACCGGAAACTGGAACGACGACCGACCGACCGAACGAGGAAGGGAGGCGCATCGCAGCACGGAGCGGACATTGCAGGTTCAGGTGTGGATTGGCTTATGGCGATCGACTGGAGAGACGGGTGTGCAAGCGAGAAACAAAGCTGACTGGGGACGAGAGAGACCGTAGCAGAGTGTAGCCACCGACGAGGTGACAATCTACAGCAGGAAGGGCAAGCCGGCGAGGAGTGTGAAGCGAGCAACTTATAATGACGAGAAACTGGGCCTTCTAAGGCCATATTCTATTCAGTAGGTGtctgtacattatatttcacCCTCCTTTGCGGGGTGCACAATCCTTAGTTTTTTCGGGAATGACATATGTATATACCCCGTAGGCAGGAATGgcaggatttttattttgaaacgaCAAGAGCCTTCTAGCTGTATTGCCTACCGGAAGTAGAACGCTTATATTTGCTTAATATTGCTAGCTTCACATTTCTAAGCCGGCGAGCCCTTCCACTAAGTTAAGTGACCCCCTTGTTTTGTTCGTGGTTCTTTATGTGCAATATAAAGAACACTGATACAGCCCAGGAATTATATGGCTTAATTCTAATGATCCGGATATTACTGATGCTATATGACTAAAGGACCCACTATTTGTTTGAGCTGGTACGAgtgttaaacacacatttttacaaaacgATAGTGACTGCTTTATTCCCTGTACCCTACCTATTTTTGCTGCTGAATCCAGGATTGGTTTTAAAgaatttagattattttaaccAGGGTTTTATAACTTTAAGAACAGtgactgctgtttttattttgttttagcctAGGAGAGTATGGCTAATGATCTGGAGTGGAGCCCTAAATGGAAGTGCTAGAGCCCGTGGAGGACTGACTGGCTCCATACTATAGGGACTCCAATTTTACTTGTTAACGACTGGCTTTTTGGTTTGCTGAACTACCACTTCCAGAGATGCATTGGACCCTTGCTGCTCTTTattctatatttgtattcttgttTATCAAACACGTAGAGCCGAGGTTTATTTTGtgagaataaaatattgtttattgataCTTGTGCTGCCTATGCTGGGGTGTTATTTGGTCGGTGGTGTGGCTCTCATTCAGAGCTATCTCGAACCTGGGCAGCATCTGGTGAAGGGAAATATCCCAAGGTGGAGTAGTCGGAGCTACAAACTTAAGAGTGCCACTGTGACATAACTATGGCTCATTCTCTTTAAAGCCTGAGAAATCCTGTCAACATATTGGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92111 lncRNA upstream 219167 36838829 ~ 36941821 (+) True G73748
TU92102 lncRNA upstream 388247 36772485 ~ 36772741 (+) True G73739
TU92048 lncRNA upstream 471923 36654955 ~ 36689065 (+) True G73689
TU91990 lncRNA upstream 660858 36490183 ~ 36500130 (+) True G73641
TU91986 lncRNA upstream 683038 36476608 ~ 36477950 (+) True G73638
TU92177 lncRNA downstream 9605 37172931 ~ 37173176 (+) True G73802
TU92181 lncRNA downstream 79909 37243235 ~ 37243446 (+) True G73806
TU92204 lncRNA downstream 134351 37297677 ~ 37298128 (+) True G73828
TU92205 lncRNA downstream 136059 37299385 ~ 37299598 (+) True G73829
TU92208 lncRNA downstream 161696 37325022 ~ 37325324 (+) True G73832
AMCG00014853 mRNA upstream 130926 37000630 ~ 37030062 (+) True AMCG00014853
AMCG00014852 mRNA upstream 246485 36913400 ~ 36914503 (+) True AMCG00014852
AMCG00014850 mRNA upstream 427735 36617665 ~ 36733253 (+) True AMCG00014850
AMCG00014848 mRNA upstream 863265 36295716 ~ 36297723 (+) True AMCG00014848
AMCG00014837 mRNA upstream 1609181 35551157 ~ 35551807 (+) True AMCG00014837
AMCG00014862 mRNA downstream 533334 37696660 ~ 37706352 (+) True AMCG00014862
AMCG00014864 mRNA downstream 590469 37753795 ~ 37754523 (+) True AMCG00014864
AMCG00014863 mRNA downstream 591533 37754859 ~ 37755848 (+) True AMCG00014863
AMCG00014870 mRNA downstream 738471 37901797 ~ 37904976 (+) True AMCG00014870
AMCG00014867 mRNA downstream 772265 37935591 ~ 37944752 (+) True AMCG00014867
TU91690 other upstream 1766339 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 2200541 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 2380398 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 2921588 34238934 ~ 34239400 (+) True G73292
TU91511 other upstream 3794888 33364755 ~ 33366100 (+) True G73244
TU92227 other downstream 354782 37518108 ~ 37518406 (+) True G73850
TU92541 other downstream 1269048 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 1647367 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 2172942 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 2443561 39606887 ~ 39621186 (+) True AMCG00014913

Expression Profile