RNA id: TU93158


Basic Information

Item Value
RNA id TU93158
length 956
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G74597
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39962930 ~ 40005067 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATTcactttgcttttttgttttctctctctctctctgtgtctcagtgcacCATTAGTTGAGTGTGTGTAttaacctctccctctctcctctcagccCTGCCCTCCGGTCATTGAGAGTTTCTTCCAGGACAAGGCACCCCTGGTGATGGGCTGGTTCCTTGGCATCGCTGCACTcatggtGTGTGCTGTGGTGTGCAGTTCAGTCCTGGCCTCTGCAATCAAGAAAGGTCGAGACTCCCCACCCTCCTACTCCAATTATGTCTACTGAGCCCCCTCTTTTCTGCCACCCCCGTCCTAAACACCAGCACATACTACATTTGTTCCACCTTGTCTACTCTGTGCGcatgcctctctctcttcctctattTTATGGAGCACCTATGGGAGCCCCTGACCATGAGTCAGCTGTGCCAGAGTTCAGCTCCAATCTGCAGCACAGTACAGTTGCAGAGTTCCTGgatcccccccccaaaaaaatctagggatcaattaaccaatcaatgGACCAATTTAACCAATTAAAGGGGCAGAACTGCAGTTTGATTCCCTGCACAGAAACCCCAACAGCCTCCCTGAGATATTGGAGATCATGGGTTCCACAATCCTGGCACAGTATTTGTTCTGCCCTGATGCCCGGCTCCAGCGTGGTTTCCCTAGCGCTGTCTCTCTCGCACCACGTGCCTCTGTTCTGTGGGTCACTGTTTCAGAGAATATACTAGTTGCTTAATtacaaatttatatatatatataacaaatatagcTATAAATcttgttctgttcttttctaAGCAGTTACAGTGTGAAGATGTTTGACTTGTTTGAAGCTCTGCATTTGTCCAGCTTTGTGacctgaatgtttttttctatctgAGGGCGATGATGTGATTGTCATCGTCCcaccaaaaatacaataaaaaggatAGTGACTGGAaaaaaaaaaaaaaaaaaaaaaaag

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93024 lncRNA downstream 233564 39753695 ~ 39753938 (-) True G74515
TU93021 lncRNA downstream 243143 39744128 ~ 39744359 (-) True G74512
TU93019 lncRNA downstream 251101 39736044 ~ 39736401 (-) True G74510
TU93009 lncRNA downstream 284908 39699563 ~ 39702594 (-) True G74501
TU92961 lncRNA downstream 362709 39623354 ~ 39624793 (-) True G74469
TU93149 lncRNA upstream 6002 40011069 ~ 40012081 (-) False G74593
TU93150 lncRNA upstream 6002 40011069 ~ 40012081 (-) False G74593
TU93153 lncRNA upstream 6002 40011069 ~ 40012081 (-) False G74593
TU93173 lncRNA upstream 37940 40043007 ~ 40043290 (-) True G74611
TU93190 lncRNA upstream 96826 40101893 ~ 40139101 (-) True G74625
AMCG00014927 mRNA downstream 26506 39958825 ~ 39960996 (-) True AMCG00014927
AMCG00014924 mRNA downstream 165413 39820563 ~ 39822089 (-) True AMCG00014924
AMCG00014920 mRNA downstream 222862 39762570 ~ 39764640 (-) True AMCG00014920
AMCG00014916 mRNA downstream 329940 39648804 ~ 39657562 (-) True AMCG00014916
AMCG00014917 mRNA downstream 346246 39640411 ~ 39641256 (-) True AMCG00014917
AMCG00014930 mRNA upstream 24705 40029772 ~ 40039325 (-) True AMCG00014930
AMCG00014935 mRNA upstream 80709 40085776 ~ 40107665 (-) True AMCG00014935
AMCG00014933 mRNA upstream 148352 40153419 ~ 40160349 (-) True AMCG00014933
AMCG00014934 mRNA upstream 157319 40162386 ~ 40164580 (-) True AMCG00014934
AMCG00014938 mRNA upstream 229991 40235058 ~ 40268485 (-) True AMCG00014938
TU93111 other downstream 4106 39901470 ~ 39983396 (-) True G74569
TU93146 other downstream 36432 39944730 ~ 39951070 (-) True G74591
TU92969 other downstream 348545 39637899 ~ 39638957 (-) True G74477
TU92854 other downstream 727142 39258062 ~ 39260360 (-) True G74375
TU92703 other downstream 1067149 38898095 ~ 38920353 (-) True G74247
TU93302 other upstream 231335 40236402 ~ 40236795 (-) False AMCG00014938
TU93314 other upstream 287089 40292156 ~ 40294526 (-) False AMCG00014946
TU93316 other upstream 298164 40303231 ~ 40304085 (-) True G74726
TU93349 other upstream 396716 40401783 ~ 40405328 (-) False AMCG00014951
TU93466 other upstream 432272 40437339 ~ 40534709 (-) False AMCG00014949

Expression Profile